{
    "type": "genome",
    "identifier": "GCF_002754935.1",
    "organism": "Parathermosynechococcus lividus PCC 6715",
    "title": "Parathermosynechococcus lividus PCC 6715",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Peking University Shenzhen Graduate School",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002754935.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06008796",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1917166",
        "species_taxid": "33070",
        "organism_name": "Parathermosynechococcus lividus PCC 6715",
        "infraspecific_name": "strain=PCC 6715",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/11/06",
        "asm_name": "ASM275493v1",
        "asm_submitter": "Peking University Shenzhen Graduate School",
        "gbrs_paired_asm": "GCA_002754935.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/754/935/GCF_002754935.1_ASM275493v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2659739",
        "genome_size_ungapped": "2659739",
        "gc_percent": "53.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002754935.1-RS_2024_11_19",
        "annotation_date": "2024-11-19",
        "total_gene_count": "2678",
        "protein_coding_gene_count": "2429",
        "non_coding_gene_count": "48",
        "pubmed_id": "35602029"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-11-06",
    "dateModified": "2017-11-06",
    "datePublished": "2017-11-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Parathermosynechococcus lividus PCC 6715"
        ],
        "sample_taxid": [
            "1917166"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Yellowstone National Park"
        ],
        "sample_host_location_id": [],
        "data_size": "0.755 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2659739",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2659739",
        "N50 (bp)": "2659739",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.5",
        "Number of CDSs": "2721",
        "Average Protein Length": "289.4",
        "Coding Ratio (%)": "88.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Thermostichus lividus",
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                "accession": "GCA_002754935.1",
                "taxid": 33070,
                "species_taxid": 33070,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 886,
                "total_fragments": 886,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thermosynechococcus vestitus",
                "strain": "strain=BP-1",
                "accession": "GCA_000011345.1",
                "taxid": 146786,
                "species_taxid": 146786,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0155,
                "matched_fragments": 326,
                "total_fragments": 886,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neosynechococcus sphagnicola",
                "strain": "strain=CAUP A 1101",
                "accession": "GCA_000775285.1",
                "taxid": 1501145,
                "species_taxid": 1501145,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7432,
                "matched_fragments": 53,
                "total_fragments": 886,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002754935.1",
                "gtdb_species": "s__Synechococcus_A lividus",
                "ani": 100.0,
                "matched_fragments": 886,
                "total_fragments": 886,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Thermosynechococcales;f__Thermosynechococcaceae;g__Synechococcus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_008386235.1",
                "gtdb_species": "s__Thermosynechococcus sp008386235",
                "ani": 78.1985,
                "matched_fragments": 378,
                "total_fragments": 886,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Thermosynechococcales;f__Thermosynechococcaceae;g__Thermosynechococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.03",
                "min_intra_species_ani": "97.03",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003555505.1",
                "gtdb_species": "s__Thermosynechococcus elongatus_B",
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                "matched_fragments": 383,
                "total_fragments": 886,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Thermosynechococcales;f__Thermosynechococcaceae;g__Thermosynechococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000505665.1",
                "gtdb_species": "s__Thermosynechococcus sp000505665",
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                "total_fragments": 886,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Thermosynechococcales;f__Thermosynechococcaceae;g__Thermosynechococcus",
                "ani_circumscription_radius": 95.0,
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_015295825.1",
                "gtdb_species": "s__Thermosynechococcus sp015295825",
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                "matched_fragments": 348,
                "total_fragments": 886,
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                "mean_intra_species_af": "0.93",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000011345.1",
                "gtdb_species": "s__Thermosynechococcus elongatus_A",
                "ani": 78.0261,
                "matched_fragments": 325,
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Thermosynechococcales;f__Thermosynechococcaceae;g__Thermosynechococcus",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_015296025.1",
                "gtdb_species": "s__Thermosynechococcus sp015296025",
                "ani": 77.9963,
                "matched_fragments": 275,
                "total_fragments": 886,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Thermosynechococcales;f__Thermosynechococcaceae;g__Thermosynechococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000316685.1",
                "gtdb_species": "s__PCC-6312 sp000316685",
                "ani": 76.2928,
                "matched_fragments": 64,
                "total_fragments": 886,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Thermosynechococcales;f__Thermosynechococcaceae;g__PCC-6312",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Parathermosynechococcus",
        "lividus",
        "PCC",
        "6715"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}