{ "type": "genome", "identifier": "GCF_002759055.1", "organism": "Methylobacterium frigidaeris", "title": "Methylobacterium frigidaeris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002759055.1", "bioproject": "PRJNA224116", "biosample": "SAMN07836923", "wgs_master": "PELK00000000.1", "refseq_category": "na", "taxid": "2038277", "species_taxid": "2038277", "organism_name": "Methylobacterium frigidaeris", "infraspecific_name": "strain=IER25-16", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/11/07", "asm_name": "ASM275905v1", "asm_submitter": "Chung-Ang University", "gbrs_paired_asm": "GCA_002759055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/759/055/GCF_002759055.1_ASM275905v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6395331", "genome_size_ungapped": "6387803", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "1670", "contig_count": "1670", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002759055.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "7072", "protein_coding_gene_count": "6284", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-11-07", "dateModified": "2017-11-07", "datePublished": "2017-11-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium frigidaeris" ], "sample_taxid": [ "2038277" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Seoul" ], "sample_host_location_id": [], "data_size": "1.743 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6395331", "Number of Sequences": "1670", "Longest Sequences (bp)": "31887", "N50 (bp)": "5448", "Gap Ratio (%)": "0.120807", "GCcontent (%)": "70.6", "Number of CDSs": "4742", "Average Protein Length": "269.2", "Coding Ratio (%)": "59.9", "Number of rRNAs": "2", "Number of tRNAs": "64", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacterium frigidaeris", "strain": "strain=IER25-16", "accession": "GCA_002759055.1", "taxid": 2038277, "species_taxid": 2038277, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1244, "total_fragments": 1263, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methylobacterium frigidaeris", "strain": "strain=JCM 32048", "accession": "GCA_022179185.1", "taxid": 2038277, "species_taxid": 2038277, "relation_to_type": "type", "validated": true, "ani": 99.933, "matched_fragments": 1251, "total_fragments": 1263, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methylobacterium currus", "strain": "strain=PR1016A", "accession": "GCA_003058325.1", "taxid": 2051553, "species_taxid": 2051553, "relation_to_type": "type", "validated": true, "ani": 91.9682, "matched_fragments": 1143, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tarhaniae", "strain": "strain=DSM 25844", "accession": "GCA_001043955.1", "taxid": 1187852, "species_taxid": 1187852, "relation_to_type": "type", "validated": true, "ani": 91.042, "matched_fragments": 1034, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terrae", "strain": "strain=17Sr1-28", "accession": "GCA_003173755.1", "taxid": 2202827, "species_taxid": 2202827, "relation_to_type": "type", "validated": true, "ani": 90.6458, "matched_fragments": 1093, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium platani", "strain": "strain=PMB02", "accession": "GCA_001653715.1", "taxid": 427683, "species_taxid": 427683, "relation_to_type": "type", "validated": true, "ani": 90.4675, "matched_fragments": 1112, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 90.3098, "matched_fragments": 1150, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nonmethylotrophicum", "strain": "strain=6HR-1", "accession": "GCA_004745635.1", "taxid": 1141884, "species_taxid": 1141884, "relation_to_type": "type", "validated": true, "ani": 90.1407, "matched_fragments": 1126, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium variabile", "strain": "strain=DSM 16961", "accession": "GCA_001043975.1", "taxid": 298794, "species_taxid": 298794, "relation_to_type": "type", "validated": true, "ani": 89.8281, "matched_fragments": 1034, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 84.7841, "matched_fragments": 977, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 84.4424, "matched_fragments": 918, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.96, "contamination": 0.46, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002759055.1", "gtdb_species": "s__Methylobacterium frigidaeris", "ani": 100.0, "matched_fragments": 1244, "total_fragments": 1263, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003058325.1", "gtdb_species": "s__Methylobacterium currus", "ani": 91.9398, "matched_fragments": 1145, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Methylobacterium", "frigidaeris" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }