{ "type": "genome", "identifier": "GCF_002760655.1", "organism": "Massilia eurypsychrophila", "title": "Massilia eurypsychrophila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002760655.1", "bioproject": "PRJNA224116", "biosample": "SAMN07785153", "wgs_master": "PDOC00000000.1", "refseq_category": "reference genome", "taxid": "1485217", "species_taxid": "1485217", "organism_name": "Massilia eurypsychrophila", "infraspecific_name": "strain=JCM 30074", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/11/07", "asm_name": "ASM276065v1", "asm_submitter": "Chinese Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_002760655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/760/655/GCF_002760655.1_ASM276065v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5949316", "genome_size_ungapped": "5949316", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "119", "contig_count": "119", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002760655.1-RS_2024_08_18", "annotation_date": "2024-08-18", "total_gene_count": "5598", "protein_coding_gene_count": "5391", "non_coding_gene_count": "87", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-11-07", "dateModified": "2017-11-07", "datePublished": "2017-11-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Massilia eurypsychrophila" ], "sample_taxid": [ "1485217" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Muztagh Glacier, Xinjiang" ], "sample_host_location_id": [], "data_size": "1.638 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5949316", "Number of Sequences": "119", "Longest Sequences (bp)": "598558", "N50 (bp)": "245733", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.0", "Number of CDSs": "5380", "Average Protein Length": "325.8", "Coding Ratio (%)": "88.4", "Number of rRNAs": "1", "Number of tRNAs": "75", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Massilia eurypsychrophila", "strain": "strain=JCM 30074", "accession": "GCA_002760655.1", "taxid": 1485217, "species_taxid": 1485217, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1933, "total_fragments": 1936, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Massilia psychrophila", "strain": "strain=JCM 30813", "accession": "GCA_002760665.1", "taxid": 1603353, "species_taxid": 1603353, "relation_to_type": "type", "validated": true, "ani": 84.9678, "matched_fragments": 1101, "total_fragments": 1936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia psychrophila", "strain": "strain=CGMCC 1.15196", "accession": "GCA_014641415.1", "taxid": 1603353, "species_taxid": 1603353, "relation_to_type": "type", "validated": true, "ani": 84.8654, "matched_fragments": 1119, "total_fragments": 1936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia polaris", "strain": "strain=RP-1-19", "accession": "GCA_012927275.1", "taxid": 2728846, "species_taxid": 2728846, "relation_to_type": "type", "validated": true, "ani": 82.7081, "matched_fragments": 984, "total_fragments": 1936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia cavernae", "strain": "strain=K1S02-61", "accession": "GCA_003590855.1", "taxid": 2320864, "species_taxid": 2320864, "relation_to_type": "type", "validated": true, "ani": 82.6863, "matched_fragments": 932, "total_fragments": 1936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia atriviolacea", "strain": "strain=SOD", "accession": "GCA_003953935.1", "taxid": 2495579, "species_taxid": 2495579, "relation_to_type": "type", "validated": true, "ani": 82.6652, "matched_fragments": 1125, "total_fragments": 1936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia mucilaginosa", "strain": "strain=CCM 8733", "accession": "GCA_011682145.1", "taxid": 2609282, "species_taxid": 2609282, "relation_to_type": "type", "validated": true, "ani": 82.4766, "matched_fragments": 1120, "total_fragments": 1936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia rubra", "strain": "strain=CCM 8692", "accession": "GCA_011682065.1", "taxid": 2607910, "species_taxid": 2607910, "relation_to_type": "type", "validated": true, "ani": 82.3858, "matched_fragments": 1090, "total_fragments": 1936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia glaciei", "strain": "strain=B448-2", "accession": "GCA_003011895.2", "taxid": 1524097, "species_taxid": 1524097, "relation_to_type": "type", "validated": true, "ani": 82.3682, "matched_fragments": 1014, "total_fragments": 1936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia violaceinigra", "strain": "strain=B2", "accession": "GCA_002752675.1", "taxid": 2045208, "species_taxid": 2045208, "relation_to_type": "type", "validated": true, "ani": 82.3208, "matched_fragments": 1072, "total_fragments": 1936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia terrae", "strain": "strain=JCM 31606", "accession": "GCA_024753145.1", "taxid": 1811224, "species_taxid": 1811224, "relation_to_type": "type", "validated": true, "ani": 81.6291, "matched_fragments": 951, "total_fragments": 1936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia norwichensis", "strain": "strain=LMG 28164", "accession": "GCA_024753245.1", "taxid": 1442366, "species_taxid": 1442366, "relation_to_type": "type", "validated": true, "ani": 81.5449, "matched_fragments": 1011, "total_fragments": 1936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia solisilvae", "strain": "strain=JCM 31607", "accession": "GCA_024753215.1", "taxid": 1811225, "species_taxid": 1811225, "relation_to_type": "type", "validated": true, "ani": 81.3563, "matched_fragments": 985, "total_fragments": 1936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia agri", "strain": "strain=JCM 31661", "accession": "GCA_024753255.1", "taxid": 1886785, "species_taxid": 1886785, "relation_to_type": "type", "validated": true, "ani": 81.0237, "matched_fragments": 990, "total_fragments": 1936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia aurea", "strain": "strain=JCM 13879", "accession": "GCA_024753205.1", "taxid": 373040, "species_taxid": 373040, "relation_to_type": "type", "validated": true, "ani": 80.5975, "matched_fragments": 883, "total_fragments": 1936, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002760655.1", "gtdb_species": "s__Massilia eurypsychrophila", "ani": 100.0, "matched_fragments": 1933, "total_fragments": 1936, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia", "ani_circumscription_radius": 95.0, 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