{ "type": "genome", "identifier": "GCF_002762335.1", "organism": "Lactobacillus terrae", "title": "Lactobacillus terrae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Microorganism Resources Division, Biological Resources Research Deportment, National Institute of Biological Resources, Incheon. Republic of Korea", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002762335.1", "bioproject": "PRJNA224116", "biosample": "SAMN07840594", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2269374", "species_taxid": "2269374", "organism_name": "Lactobacillus terrae", "infraspecific_name": "strain=NIBRBAC000499792", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/11/09", "asm_name": "ASM276233v1", "asm_submitter": "Microorganism Resources Division, Biological Resources Research Deportment, National Institute of Biological Resources, Incheon. Republic of Korea", "gbrs_paired_asm": "GCA_002762335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/762/335/GCF_002762335.1_ASM276233v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1548794", "genome_size_ungapped": "1548794", "gc_percent": "33.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002762335.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "1627", "protein_coding_gene_count": "1550", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-11-09", "dateModified": "2017-11-09", "datePublished": "2017-11-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Lactobacillus terrae" ], "sample_taxid": [ "2269374" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Cheonan" ], "sample_host_location_id": [], "data_size": "0.429 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1548794", "Number of Sequences": "1", "Longest Sequences (bp)": "1548794", "N50 (bp)": "1548794", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.1", "Number of CDSs": "1588", "Average Protein Length": "293.3", "Coding Ratio (%)": "90.2", "Number of rRNAs": "9", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Companilactobacillus bobalius", "strain": 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"validated": true, "ani": 78.075, "matched_fragments": 92, "total_fragments": 516, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Companilactobacillus huachuanensis", "strain": "strain=395-6.2", "accession": "GCA_005404815.1", "taxid": 2559914, "species_taxid": 2559914, "relation_to_type": "type", "validated": true, "ani": 78.0368, "matched_fragments": 110, "total_fragments": 516, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Companilactobacillus kimchii", "strain": "strain=DSM 13961", "accession": "GCA_001435445.1", "taxid": 2801452, "species_taxid": 2801452, "relation_to_type": "type", "validated": true, "ani": 78.0126, "matched_fragments": 118, "total_fragments": 516, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Companilactobacillus futsaii", "strain": "strain=JCM 17355", "accession": "GCA_001435505.1", "taxid": 938155, "species_taxid": 938155, "relation_to_type": "type", "validated": true, "ani": 77.7594, 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