{ "type": "genome", "identifier": "GCF_002764115.1", "organism": "Phyllobacterium zundukense", "title": "Phyllobacterium zundukense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "ARRIAM", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002764115.1", "bioproject": "PRJNA224116", "biosample": "SAMN05946057", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1867719", "species_taxid": "1867719", "organism_name": "Phyllobacterium zundukense", "infraspecific_name": "strain=Tri-48; RCAM 03910", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/11/13", "asm_name": "ASM276411v1", "asm_submitter": "ARRIAM", "gbrs_paired_asm": "GCA_002764115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/764/115/GCF_002764115.1_ASM276411v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6208009", "genome_size_ungapped": "6208009", "gc_percent": "57.000000", "replicon_count": "6", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-05", "total_gene_count": "6111", "protein_coding_gene_count": "5810", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-11-13", "dateModified": "2017-11-13", "datePublished": "2017-11-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Phyllobacterium zundukense" ], "sample_taxid": [ "1867719" ], "sample_host_organism": [ "Oxytropis triphylla" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Baikal Lake region, Siberia" ], "sample_host_location_id": [], "data_size": "1.756 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6208009", "Number of Sequences": "6", "Longest Sequences (bp)": "3950702", "N50 (bp)": "3950702", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.2", "Number of CDSs": "6203", "Average Protein Length": "288.0", "Coding Ratio (%)": "86.3", "Number of rRNAs": "9", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phyllobacterium zundukense", "strain": "strain=Tri-48; RCAM 03910", "accession": "GCA_002764115.1", "taxid": 1867719, "species_taxid": 1867719, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2065, "total_fragments": 2066, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Phyllobacterium sophorae", "strain": "strain=CCBAU 03422", "accession": "GCA_003010965.1", "taxid": 1520277, "species_taxid": 1520277, "relation_to_type": "type", "validated": true, "ani": 86.1005, "matched_fragments": 1350, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium brassicacearum", "strain": "strain=STM 196", "accession": "GCA_003010955.1", "taxid": 314235, "species_taxid": 314235, "relation_to_type": "type", "validated": true, "ani": 83.2451, "matched_fragments": 1297, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium trifolii", "strain": "strain=CECT 7015", "accession": "GCA_014192095.1", "taxid": 300193, "species_taxid": 300193, "relation_to_type": "type", "validated": true, "ani": 81.8177, "matched_fragments": 1046, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium bourgognense", "strain": "strain=31-25a", "accession": "GCA_003337575.1", "taxid": 314236, "species_taxid": 314236, "relation_to_type": "type", "validated": true, "ani": 81.634, "matched_fragments": 1047, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium calauticae", "strain": "strain=R2-JL", "accession": "GCA_019991125.1", "taxid": 2817027, "species_taxid": 2817027, "relation_to_type": "type", "validated": true, "ani": 80.9326, "matched_fragments": 891, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium myrsinacearum", "strain": "strain=DSM 5892", "accession": "GCA_002980555.1", "taxid": 28101, "species_taxid": 28101, "relation_to_type": "type", "validated": true, "ani": 80.8067, "matched_fragments": 893, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium myrsinacearum", "strain": "strain=IAM 13584", "accession": "GCA_003182235.1", "taxid": 28101, "species_taxid": 28101, "relation_to_type": "type", "validated": true, "ani": 80.7497, "matched_fragments": 886, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium pellucidum", "strain": "strain=BT25", "accession": "GCA_013327855.1", "taxid": 2740464, "species_taxid": 2740464, "relation_to_type": "type", "validated": true, "ani": 80.4855, "matched_fragments": 860, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium endophyticum", "strain": "strain=PEPV15", "accession": "GCA_003010935.1", "taxid": 1149773, "species_taxid": 1149773, "relation_to_type": "type", "validated": true, "ani": 80.1888, "matched_fragments": 876, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 77.8579, "matched_fragments": 426, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium microcysteis", "strain": "strain=NIBR3", "accession": "GCA_014495845.1", "taxid": 675281, "species_taxid": 675281, "relation_to_type": "type", "validated": true, "ani": 77.5047, "matched_fragments": 285, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella sumterensis", "strain": "strain=MEC087", "accession": "GCA_004514425.2", "taxid": 1967501, "species_taxid": 1967501, "relation_to_type": "type", "validated": true, "ani": 77.4391, "matched_fragments": 291, "total_fragments": 2066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": 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