{ "type": "genome", "identifier": "GCF_002770595.1", "organism": "Chryseobacterium camelliae", "title": "Chryseobacterium camelliae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Amorepacific", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002770595.1", "bioproject": "PRJNA224116", "biosample": "SAMN07337715", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1265445", "species_taxid": "1265445", "organism_name": "Chryseobacterium camelliae", "infraspecific_name": "strain=Dolsongi-HT1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/11/14", "asm_name": "ASM277059v1", "asm_submitter": "Amorepacific", "gbrs_paired_asm": "GCA_002770595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/770/595/GCF_002770595.1_ASM277059v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4376354", "genome_size_ungapped": "4376354", "gc_percent": "42.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-05", "total_gene_count": "4013", "protein_coding_gene_count": "3920", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-11-14", "dateModified": "2017-11-14", "datePublished": "2017-11-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium camelliae" ], "sample_taxid": [ "1265445" ], "sample_host_organism": [ "Camellia sinensis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Dolsongi-tea field" ], "sample_host_location_id": [], "data_size": "1.233 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4376354", "Number of Sequences": "1", "Longest Sequences (bp)": "4376354", "N50 (bp)": "4376354", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.8", "Number of CDSs": "3906", "Average Protein Length": "324.0", "Coding Ratio (%)": "86.8", "Number of rRNAs": "12", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium camelliae", "strain": "strain=Dolsongi-HT1", "accession": "GCA_002770595.1", "taxid": 1265445, "species_taxid": 1265445, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1455, "total_fragments": 1458, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium hagamense", "strain": "strain=NBRC 105253", "accession": "GCA_007991455.1", "taxid": 395935, "species_taxid": 395935, "relation_to_type": "type", "validated": true, "ani": 79.5456, "matched_fragments": 644, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium mucoviscidosis", "strain": "strain=VT16-26", "accession": "GCA_002177115.1", "taxid": 1945581, "species_taxid": 1945581, "relation_to_type": "type", "validated": true, "ani": 79.3276, "matched_fragments": 518, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium cheonjiense", "strain": "strain=RJ-7-14", "accession": "GCA_012927265.1", "taxid": 2728845, "species_taxid": 2728845, "relation_to_type": "type", "validated": true, "ani": 79.167, "matched_fragments": 561, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gambrini", "strain": "strain=DSM 18014", "accession": "GCA_900156825.1", "taxid": 373672, "species_taxid": 373672, "relation_to_type": "type", "validated": true, "ani": 79.1612, "matched_fragments": 558, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium phocaeense", "strain": "strain=6021061333", "accession": "GCA_900169075.1", "taxid": 1816690, "species_taxid": 1816690, "relation_to_type": "type", "validated": true, "ani": 79.0536, "matched_fragments": 566, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gregarium", "strain": "strain=DSM 19109", "accession": "GCA_000430845.1", "taxid": 456299, "species_taxid": 456299, "relation_to_type": "type", "validated": true, "ani": 79.0393, "matched_fragments": 594, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oranimense", "strain": "strain=DSM 19055", "accession": "GCA_900129755.1", "taxid": 421058, "species_taxid": 421058, "relation_to_type": "type", "validated": true, "ani": 78.9855, "matched_fragments": 572, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium taeanense", "strain": "strain=DSM 17071", "accession": "GCA_900099685.1", "taxid": 311334, "species_taxid": 311334, "relation_to_type": "type", "validated": true, "ani": 78.9516, "matched_fragments": 488, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 78.8927, "matched_fragments": 390, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium hispalense", "strain": "strain=DSM 25574", "accession": "GCA_000708615.2", "taxid": 1453492, "species_taxid": 1453492, "relation_to_type": "type", "validated": true, "ani": 78.8168, "matched_fragments": 523, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium aureum", "strain": "strain=17S1E7", "accession": "GCA_003971235.1", "taxid": 2497456, "species_taxid": 2497456, "relation_to_type": "type", "validated": true, "ani": 78.7446, "matched_fragments": 529, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium luteum", "strain": "strain=DSM 18605", "accession": "GCA_000737785.1", "taxid": 421531, "species_taxid": 421531, "relation_to_type": "type", "validated": true, "ani": 78.7437, "matched_fragments": 550, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oleae", "strain": "strain=DSM 25575", "accession": "GCA_900115055.1", "taxid": 491207, "species_taxid": 491207, "relation_to_type": "type", "validated": true, "ani": 78.6759, "matched_fragments": 496, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium candidae", "strain": "strain=JC507", "accession": "GCA_004916905.1", "taxid": 1978493, "species_taxid": 1978493, "relation_to_type": "type", "validated": true, "ani": 78.6518, "matched_fragments": 507, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium lathyri", "strain": "strain=NBRC 105250", "accession": "GCA_007991435.1", "taxid": 395933, "species_taxid": 395933, "relation_to_type": "type", "validated": true, "ani": 78.6119, "matched_fragments": 507, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium lathyri", "strain": "strain=KCTC 22544", "accession": "GCA_003290185.1", "taxid": 395933, "species_taxid": 395933, "relation_to_type": "type", "validated": true, "ani": 78.597, "matched_fragments": 519, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium viscerum", "strain": "strain=687B-08", "accession": "GCA_002899945.2", "taxid": 1037377, "species_taxid": 1037377, "relation_to_type": "type", "validated": true, "ani": 78.577, "matched_fragments": 468, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium vrystaatense", "strain": "strain=LMG 22846", "accession": "GCA_000737765.1", "taxid": 307480, "species_taxid": 307480, "relation_to_type": "type", "validated": true, "ani": 78.5767, "matched_fragments": 475, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizoplanae", "strain": "strain=DSM 29371", "accession": "GCA_900182655.1", "taxid": 1609531, "species_taxid": 1609531, "relation_to_type": "type", "validated": true, "ani": 78.5296, "matched_fragments": 501, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium culicis", "strain": "strain=DSM 23031", "accession": "GCA_900108365.1", "taxid": 680127, "species_taxid": 680127, "relation_to_type": "type", "validated": true, "ani": 78.5272, "matched_fragments": 523, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium cucumeris", "strain": "strain=GSE06", "accession": "GCA_001593385.1", "taxid": 1813611, "species_taxid": 1813611, "relation_to_type": "type", "validated": true, "ani": 78.499, "matched_fragments": 503, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium soli", "strain": "strain=DSM 19298", "accession": "GCA_000737705.1", "taxid": 445961, "species_taxid": 445961, "relation_to_type": "type", "validated": true, "ani": 78.4137, "matched_fragments": 493, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 78.4069, "matched_fragments": 286, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 78.0772, "matched_fragments": 335, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_020985365.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 77.5997, "matched_fragments": 137, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_019195395.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 77.5908, "matched_fragments": 137, "total_fragments": 1458, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002770595.1", "gtdb_species": "s__Chryseobacterium camelliae", "ani": 100.0, "matched_fragments": 1455, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_008329705.1", "gtdb_species": "s__Chryseobacterium sp008329705", "ani": 79.9816, "matched_fragments": 644, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018603435.1", "gtdb_species": "s__Chryseobacterium sp013153155", "ani": 79.7625, "matched_fragments": 582, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.28", "min_intra_species_ani": "96.28", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007991455.1", "gtdb_species": "s__Chryseobacterium hagamense", "ani": 79.539, "matched_fragments": 643, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002177115.1", "gtdb_species": "s__Chryseobacterium mucoviscidosis", "ani": 79.3096, "matched_fragments": 520, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.1494, "mean_intra_species_ani": "96.26", "min_intra_species_ani": "95.97", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.75", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_001421435.1", "gtdb_species": "s__Chryseobacterium sp001421435", "ani": 79.2997, "matched_fragments": 609, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900156825.1", "gtdb_species": "s__Chryseobacterium gambrini", "ani": 79.1522, "matched_fragments": 559, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.1494, "mean_intra_species_ani": "96.49", "min_intra_species_ani": "96.36", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001295265.1", "gtdb_species": "s__Chryseobacterium indologenes_A", "ani": 79.0932, "matched_fragments": 513, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000430845.1", "gtdb_species": "s__Chryseobacterium gregarium", "ani": 79.0378, "matched_fragments": 596, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900129755.1", "gtdb_species": "s__Chryseobacterium oranimense", "ani": 79.0014, "matched_fragments": 570, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.88", "min_intra_species_ani": "97.88", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900099685.1", "gtdb_species": "s__Chryseobacterium taeanense", "ani": 78.9689, "matched_fragments": 487, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003384725.1", "gtdb_species": "s__Chryseobacterium sp003384725", "ani": 78.8414, "matched_fragments": 478, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003971235.1", "gtdb_species": "s__Chryseobacterium aureum", "ani": 78.7839, "matched_fragments": 529, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900156075.1", "gtdb_species": "s__Chryseobacterium sp900156075", "ani": 78.7595, "matched_fragments": 380, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014204415.1", "gtdb_species": "s__Chryseobacterium defluvii_A", "ani": 78.7482, "matched_fragments": 472, "total_fragments": 1458, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001045445.1", "gtdb_species": "s__Chryseobacterium sp001045445", "ani": 78.7474, "matched_fragments": 556, "total_fragments": 1458, 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