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<BioSampleSet><BioSample access="public" publication_date="2017-11-01T00:00:00.000" last_update="2021-02-28T03:50:58.419" submission_date="2016-11-21T22:58:05.163" id="6046392" accession="SAMN06046392">   <Ids>     <Id db="BioSample" is_primary="1">SAMN06046392</Id>     <Id db_label="Sample name">Chesapeake 2014 CTD12-5</Id>     <Id db="SRA">SRS1814648</Id>   </Ids>   <Description>     <Title>Complete genome of Mariprofundus micogutta strain CP-5</Title>     <Organism taxonomy_id="1921086" taxonomy_name="Mariprofundus aestuarium">       <OrganismName>Mariprofundus aestuarium</OrganismName>     </Organism>     <Comment>       <Paragraph>Zetaproteobacteria, a class of marine neutrophilic iron-oxidizing bacteria (FeOB), have recently begun to be recognized in coastal environments. Here we present the genome of Mariprofundus micogutta strain CP-5. Isolated from the oxic-anoxic transition zone of the Chesapeake Bay during seasonal stratification, this chemolithoautotroph produces bundles of iron-oxide dread structures, and is novel for its planktonic lifestyle.</Paragraph>       <Paragraph>Keywords: GSC:MIxS;MIGS:6.0</Paragraph>     </Comment>   </Description>   <Owner>     <Name>University of Delaware</Name>     <Contacts>       <Contact>         <Name>           <First>Sean</First>           <Last>McAllister</Last>           <Middle>M</Middle>         </Name>       </Contact>     </Contacts>   </Owner>   <Models>     <Model>MIGS.ba</Model>     <Model>MIGS/MIMS/MIMARKS.water</Model>   </Models>   <Package display_name="MIGS: cultured bacteria/archaea, water; version 6.0">MIGS.ba.water.6.0</Package>   <Attributes>     <Attribute attribute_name="strain" harmonized_name="strain" display_name="strain">CP-5</Attribute>     <Attribute attribute_name="collection_date" harmonized_name="collection_date" display_name="collection date">2014-08</Attribute>     <Attribute attribute_name="depth" harmonized_name="depth" display_name="depth">11.4 m</Attribute>     <Attribute attribute_name="env_biome" harmonized_name="env_broad_scale" display_name="broad-scale environmental context">estuarine biome</Attribute>     <Attribute attribute_name="env_feature" harmonized_name="env_local_scale" display_name="local-scale environmental context">bay</Attribute>     <Attribute attribute_name="env_material" harmonized_name="env_medium" display_name="environmental medium">coastal water</Attribute>     <Attribute attribute_name="geo_loc_name" harmonized_name="geo_loc_name" display_name="geographic location">USA: Chesapeake Bay</Attribute>     <Attribute attribute_name="isol_growth_condt" harmonized_name="isol_growth_condt" display_name="isolation and growth condition">16260287</Attribute>     <Attribute attribute_name="lat_lon" harmonized_name="lat_lon" display_name="latitude and longitude">38.9767 N 76.368 W</Attribute>     <Attribute attribute_name="num_replicons" harmonized_name="num_replicons" display_name="number of replicons">1</Attribute>     <Attribute attribute_name="ref_biomaterial" harmonized_name="ref_biomaterial" display_name="reference for biomaterial">Publication in Prep</Attribute>     <Attribute attribute_name="biotic_relationship" harmonized_name="biotic_relationship" display_name="observed biotic relationship">free living</Attribute>     <Attribute attribute_name="diss_oxygen" harmonized_name="diss_oxygen" display_name="dissolved oxygen">0.9 micromolar</Attribute>     <Attribute attribute_name="estimated_size" harmonized_name="estimated_size" display_name="estimated size">2.54 Mb</Attribute>     <Attribute attribute_name="isolation_source" harmonized_name="isolation_source" display_name="isolation source">water column oxic-anoxic transition zone</Attribute>     <Attribute attribute_name="oxy_stat_samp" harmonized_name="oxy_stat_samp" display_name="oxygenation status of sample">aerobic</Attribute>     <Attribute attribute_name="ph" harmonized_name="ph" display_name="pH">7.4</Attribute>     <Attribute attribute_name="rel_to_oxygen" harmonized_name="rel_to_oxygen" display_name="relationship to oxygen">microaerophilic</Attribute>     <Attribute attribute_name="salinity" harmonized_name="salinity" display_name="salinity">17 ppt</Attribute>     <Attribute attribute_name="samp_collect_device" harmonized_name="samp_collect_device" display_name="sample collection device or method">CTD</Attribute>     <Attribute attribute_name="sulfide" harmonized_name="sulfide" display_name="sulfide">0 micromolar</Attribute>     <Attribute attribute_name="temp" harmonized_name="temp" display_name="temperature">25.3 degrees celsius</Attribute>     <Attribute attribute_name="trophic_level" harmonized_name="trophic_level" display_name="trophic level">chemolithoautotroph</Attribute>     <Attribute attribute_name="Fe(II) Total">1.36 micromolar</Attribute>     <Attribute attribute_name="Fe(II) Total Standard Deviation">0.07 micromolar</Attribute>     <Attribute attribute_name="Fe(II) Dissolved and Nanoparticulate">0.41 micromolar</Attribute>     <Attribute attribute_name="Fe(II) Dissolved and Nanoparticulate Standard Deviation">0.03 micromolar</Attribute>     <Attribute attribute_name="Fe(III) Total">0.14 micromolar</Attribute>     <Attribute attribute_name="Fe(III) Total Standard Deviation">0.04 micromolar</Attribute>     <Attribute attribute_name="Fe(III) Dissolved and Nanoparticulate">0.06 micromolar</Attribute>     <Attribute attribute_name="Fe(III) Dissolved and Nanoparticulate Standard Deviation">0.02 micromolar</Attribute>     <Attribute attribute_name="type-material">type strain of Mariprofundus aestuarium</Attribute>   </Attributes>   <Links/>   <Status status="live" when="2017-11-01T00:50:32.733"/> </BioSample> </BioSampleSet>
