{ "type": "genome", "identifier": "GCF_002796795.1", "organism": "Epibacterium ulvae", "title": "Epibacterium ulvae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University if New South Wales", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002796795.1", "bioproject": "PRJNA224116", "biosample": "SAMN08054670", "wgs_master": "PHJF00000000.1", "refseq_category": "reference genome", "taxid": "1156985", "species_taxid": "1156985", "organism_name": "Epibacterium ulvae", "infraspecific_name": "strain=U95", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/11/27", "asm_name": "ASM279679v1", "asm_submitter": "University if New South Wales", "gbrs_paired_asm": "GCA_002796795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/796/795/GCF_002796795.1_ASM279679v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4092893", "genome_size_ungapped": "4092310", "gc_percent": "53.000000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002796795.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3984", "protein_coding_gene_count": "3873", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-11-27", "dateModified": "2017-11-27", "datePublished": "2017-11-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Epibacterium ulvae" ], "sample_taxid": [ "1156985" ], "sample_host_organism": [ "Ulva australis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Sydney" ], "sample_host_location_id": [], "data_size": "1.166 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4092893", "Number of Sequences": "25", "Longest Sequences (bp)": "804761", "N50 (bp)": "376756", "Gap Ratio (%)": "0.014244", "GCcontent (%)": "53.0", "Number of CDSs": "3935", "Average Protein Length": "307.9", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Epibacterium ulvae", "strain": "strain=U95", "accession": "GCA_002796795.1", "taxid": 1156985, "species_taxid": 1156985, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1353, "total_fragments": 1354, 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"Phaeobacter gallaeciensis", "strain": "strain=DSM 26640", "accession": "GCA_000819625.1", "taxid": 60890, "species_taxid": 60890, "relation_to_type": "type", "validated": true, "ani": 78.5071, "matched_fragments": 259, "total_fragments": 1354, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeobacter gallaeciensis", "strain": "strain=DSM 26640", "accession": "GCA_000511385.1", "taxid": 60890, "species_taxid": 60890, "relation_to_type": "type", "validated": true, "ani": 78.4768, "matched_fragments": 263, "total_fragments": 1354, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actibacterium lipolyticum", "strain": "strain=CECT 8621", "accession": "GCA_900184935.1", "taxid": 1524263, "species_taxid": 1524263, "relation_to_type": "type", "validated": true, "ani": 78.3789, "matched_fragments": 133, "total_fragments": 1354, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tritonibacter aquimaris", "strain": "strain=SM1969", "accession": "GCA_009617595.1", "taxid": 2663379, "species_taxid": 2663379, "relation_to_type": "type", "validated": true, "ani": 78.2818, "matched_fragments": 320, "total_fragments": 1354, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tritonibacter multivorans", "strain": "strain=CECT 7557", "accession": "GCA_001458415.1", "taxid": 928856, "species_taxid": 928856, "relation_to_type": "type", "validated": true, "ani": 77.8287, "matched_fragments": 262, "total_fragments": 1354, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera aquimarina", "strain": "strain=DSM 24565", "accession": "GCA_000473165.1", "taxid": 476529, "species_taxid": 476529, "relation_to_type": "type", "validated": true, "ani": 77.7226, "matched_fragments": 234, "total_fragments": 1354, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia haliotis", "strain": "strain=DSM 28453", "accession": "GCA_900114415.1", "taxid": 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