{ "type": "genome", "identifier": "GCF_002797755.1", "organism": "Brevirhabdus pacifica", "title": "Brevirhabdus pacifica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002797755.1", "bioproject": "PRJNA224116", "biosample": "SAMN07620883", "wgs_master": "PGFI00000000.1", "refseq_category": "reference genome", "taxid": "1267768", "species_taxid": "1267768", "organism_name": "Brevirhabdus pacifica", "infraspecific_name": "strain=DSM 27767", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/11/28", "asm_name": "ASM279775v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_002797755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/797/755/GCF_002797755.1_ASM279775v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3424577", "genome_size_ungapped": "3424577", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002797755.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "3286", "protein_coding_gene_count": "3204", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-11-28", "dateModified": "2017-11-28", "datePublished": "2017-11-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevirhabdus pacifica" ], "sample_taxid": [ "1267768" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.940 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3424577", "Number of Sequences": "19", "Longest Sequences (bp)": "1981690", "N50 (bp)": "1981690", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.6", "Number of CDSs": "3239", "Average Protein Length": "317.0", "Coding Ratio (%)": "89.9", "Number of rRNAs": "6", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevirhabdus pacifica", "strain": "strain=DSM 27767", "accession": "GCA_002797755.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1130, "total_fragments": 1131, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Brevirhabdus pacifica", "strain": "strain=22DY15", "accession": "GCA_002094875.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 99.7173, "matched_fragments": 904, "total_fragments": 1131, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=CGMCC 1.13219", "accession": "GCA_014640375.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 79.2107, "matched_fragments": 458, "total_fragments": 1131, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=DSM 29340", "accession": "GCA_900109035.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 79.1733, "matched_fragments": 458, "total_fragments": 1131, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain=2CG4", "accession": "GCA_009697225.1", "taxid": 2662447, "species_taxid": 2662447, "relation_to_type": "type", "validated": true, "ani": 78.8683, "matched_fragments": 432, "total_fragments": 1131, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga sediminicola", "strain": "strain=BH-SD19", "accession": "GCA_003072125.1", "taxid": 2170575, "species_taxid": 2170575, "relation_to_type": "type", "validated": true, "ani": 78.8486, "matched_fragments": 398, "total_fragments": 1131, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum strictum", "strain": "strain=DSM 11289", "accession": "GCA_009649175.1", "taxid": 58314, "species_taxid": 58314, "relation_to_type": "type", "validated": true, "ani": 78.8179, "matched_fragments": 411, "total_fragments": 1131, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 78.8073, "matched_fragments": 356, "total_fragments": 1131, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola marinus", "strain": "strain=CECT 7751", "accession": "GCA_900172385.1", "taxid": 396013, "species_taxid": 396013, "relation_to_type": "type", "validated": true, "ani": 78.7431, "matched_fragments": 418, "total_fragments": 1131, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus liaowanqingii", "strain": "strain=2251", "accession": "GCA_004683865.2", "taxid": 2560053, "species_taxid": 2560053, "relation_to_type": "type", "validated": true, "ani": 78.7064, "matched_fragments": 384, "total_fragments": 1131, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigidibacter mobilis", "strain": "strain=cai42", "accession": "GCA_001620265.1", "taxid": 1335048, "species_taxid": 1335048, "relation_to_type": 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