{
    "type": "genome",
    "identifier": "GCF_002797785.1",
    "organism": "Capnocytophaga canimorsus",
    "title": "Capnocytophaga canimorsus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002797785.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07621029",
        "wgs_master": "PGTV00000000.1",
        "refseq_category": "na",
        "taxid": "28188",
        "species_taxid": "28188",
        "organism_name": "Capnocytophaga canimorsus",
        "infraspecific_name": "strain=DSM 19204",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/11/28",
        "asm_name": "ASM279778v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_002797785.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/797/785/GCF_002797785.1_ASM279778v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2379032",
        "genome_size_ungapped": "2379032",
        "gc_percent": "36.000000",
        "replicon_count": "0",
        "scaffold_count": "20",
        "contig_count": "20",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002797785.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "2114",
        "protein_coding_gene_count": "2060",
        "non_coding_gene_count": "46",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-11-28",
    "dateModified": "2017-11-28",
    "datePublished": "2017-11-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Capnocytophaga canimorsus"
        ],
        "sample_taxid": [
            "28188"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.668 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2379032",
        "Number of Sequences": "20",
        "Longest Sequences (bp)": "946476",
        "N50 (bp)": "278964",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.2",
        "Number of CDSs": "2045",
        "Average Protein Length": "334.5",
        "Coding Ratio (%)": "86.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Capnocytophaga canimorsus",
                "strain": "strain=DSM 19204",
                "accession": "GCA_002797785.1",
                "taxid": 28188,
                "species_taxid": 28188,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 780,
                "total_fragments": 782,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Capnocytophaga canimorsus",
                "strain": "strain=NCTC12242",
                "accession": "GCA_900460905.1",
                "taxid": 28188,
                "species_taxid": 28188,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9959,
                "matched_fragments": 782,
                "total_fragments": 782,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Capnocytophaga canimorsus",
                "strain": "strain=7120",
                "accession": "GCA_002302565.1",
                "taxid": 28188,
                "species_taxid": 28188,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9954,
                "matched_fragments": 782,
                "total_fragments": 782,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Capnocytophaga cynodegmi",
                "strain": "strain=E6447",
                "accession": "GCA_000379185.1",
                "taxid": 28189,
                "species_taxid": 28189,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.0283,
                "matched_fragments": 290,
                "total_fragments": 782,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga canis",
                "strain": "strain=CcD38",
                "accession": "GCA_000827555.1",
                "taxid": 1848903,
                "species_taxid": 1848903,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.96,
                "matched_fragments": 206,
                "total_fragments": 782,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga felis",
                "strain": "strain=KC07070",
                "accession": "GCA_009684755.1",
                "taxid": 2267611,
                "species_taxid": 2267611,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7816,
                "matched_fragments": 278,
                "total_fragments": 782,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium jejuense",
                "strain": "strain=EC11",
                "accession": "GCA_006491595.2",
                "taxid": 1544455,
                "species_taxid": 1544455,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9689,
                "matched_fragments": 52,
                "total_fragments": 782,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002302565.1",
                "gtdb_species": "s__Capnocytophaga canimorsus",
                "ani": 99.9954,
                "matched_fragments": 782,
                "total_fragments": 782,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.20",
                "min_intra_species_ani": "97.29",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 15,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000379185.1",
                "gtdb_species": "s__Capnocytophaga cynodegmi",
                "ani": 88.0283,
                "matched_fragments": 290,
                "total_fragments": 782,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.53",
                "min_intra_species_ani": "96.05",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_000827555.1",
                "gtdb_species": "s__Capnocytophaga canis",
                "ani": 86.0055,
                "matched_fragments": 205,
                "total_fragments": 782,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.20",
                "min_intra_species_ani": "97.91",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_002302635.1",
                "gtdb_species": "s__Capnocytophaga stomatis",
                "ani": 81.5187,
                "matched_fragments": 311,
                "total_fragments": 782,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.71",
                "min_intra_species_ani": "97.65",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_009684755.1",
                "gtdb_species": "s__Capnocytophaga felis",
                "ani": 80.774,
                "matched_fragments": 277,
                "total_fragments": 782,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.93",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000023285.1",
                "gtdb_species": "s__Capnocytophaga ochracea",
                "ani": 77.3166,
                "matched_fragments": 68,
                "total_fragments": 782,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.34",
                "min_intra_species_ani": "96.09",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCF_003352465.1",
                "gtdb_species": "s__Kordia sp003352465",
                "ani": 76.011,
                "matched_fragments": 52,
                "total_fragments": 782,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Kordia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006491595.2",
                "gtdb_species": "s__Flavobacterium jejuense",
                "ani": 75.9689,
                "matched_fragments": 52,
                "total_fragments": 782,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.388,
        "cell_length": 0.5,
        "doubling_h": null,
        "growth_tmp": 34.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 6.75,
        "genome_size": 2492306.25,
        "gc_content": 36.202,
        "coding_genes": 2177.333,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 44.8,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Capnocytophaga",
        "canimorsus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}