{ "type": "genome", "identifier": "GCF_002798015.1", "organism": "Luteimicrobium subarcticum", "title": "Luteimicrobium subarcticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002798015.1", "bioproject": "PRJNA224116", "biosample": "SAMN07621183", "wgs_master": "PGTZ00000000.1", "refseq_category": "reference genome", "taxid": "620910", "species_taxid": "620910", "organism_name": "Luteimicrobium subarcticum", "infraspecific_name": "strain=DSM 22413", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/11/28", "asm_name": "ASM279801v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_002798015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/798/015/GCF_002798015.1_ASM279801v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3632746", "genome_size_ungapped": "3632746", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002798015.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3241", "protein_coding_gene_count": "3167", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-11-28", "dateModified": "2017-11-28", "datePublished": "2017-11-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Luteimicrobium subarcticum" ], "sample_taxid": [ "620910" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": 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"below_threshold" }, { "organism_name": "Oerskovia turbata", "strain": "strain=JCM3160", "accession": "GCA_004121315.1", "taxid": 1713, "species_taxid": 1713, "relation_to_type": "type", "validated": true, "ani": 79.6839, "matched_fragments": 572, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia douganii", "strain": "strain=Sa1BUA8", "accession": "GCA_015142735.1", "taxid": 2762210, "species_taxid": 2762210, "relation_to_type": "type", "validated": true, "ani": 79.5845, "matched_fragments": 583, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia merdavium", "strain": "strain=Sa2CUA9", "accession": "GCA_014836755.1", "taxid": 2762227, "species_taxid": 2762227, "relation_to_type": "type", "validated": true, "ani": 79.5204, "matched_fragments": 575, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas uda", "strain": "strain=NBRC 3747", "accession": "GCA_006538705.1", "taxid": 1714, "species_taxid": 1714, "relation_to_type": "type", "validated": true, "ani": 79.4106, "matched_fragments": 524, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium arenosum", "strain": "strain=KCTC 49039", "accession": "GCA_014837295.1", "taxid": 2708133, "species_taxid": 2708133, "relation_to_type": "type", "validated": true, "ani": 79.403, "matched_fragments": 580, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 79.3794, "matched_fragments": 566, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas massiliensis", "strain": "strain=JC225", "accession": "GCA_000312005.1", "taxid": 1465811, "species_taxid": 1465811, "relation_to_type": "type", "validated": true, "ani": 79.3278, "matched_fragments": 521, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas soli", "strain": "strain=DSM 24484", "accession": "GCA_013409305.1", "taxid": 931535, "species_taxid": 931535, "relation_to_type": "type", "validated": true, "ani": 79.2084, "matched_fragments": 491, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas cellasea", "strain": "strain=DSM 20118", "accession": "GCA_000767135.1", "taxid": 43670, "species_taxid": 43670, "relation_to_type": "type", "validated": true, "ani": 79.0802, "matched_fragments": 477, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fulva", "strain": "strain=DKR-3", "accession": "GCA_018531375.1", "taxid": 2835530, "species_taxid": 2835530, "relation_to_type": "type", "validated": true, "ani": 79.0639, "matched_fragments": 536, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas cellasea", "strain": "strain=NBRC 3753", "accession": "GCA_006538745.1", "taxid": 43670, "species_taxid": 43670, "relation_to_type": "type", "validated": true, "ani": 79.0222, "matched_fragments": 602, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sanguibacter suaedae", "strain": "strain=YZGR15", "accession": "GCA_016342785.1", "taxid": 2795737, "species_taxid": 2795737, "relation_to_type": "type", "validated": true, "ani": 78.9059, "matched_fragments": 440, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas terrae", "strain": "strain=NBRC 100819", "accession": "GCA_007990265.1", "taxid": 311234, "species_taxid": 311234, "relation_to_type": "type", "validated": true, "ani": 78.8778, "matched_fragments": 508, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas avistercoris", "strain": "strain=Sa3CUA2", "accession": "GCA_014836445.1", "taxid": 2762242, "species_taxid": 2762242, "relation_to_type": "type", "validated": true, "ani": 78.8322, "matched_fragments": 543, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas hominis", "strain": "strain=DSM 9581", "accession": "GCA_014201095.1", "taxid": 156981, "species_taxid": 156981, "relation_to_type": "suspected-type", "validated": true, "ani": 78.8126, "matched_fragments": 569, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas hominis", "strain": "strain=NBRC 16055", "accession": "GCA_007989225.1", "taxid": 156981, "species_taxid": 156981, "relation_to_type": "suspected-type", "validated": true, "ani": 78.7973, "matched_fragments": 543, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas xylanilytica", "strain": "strain=NBRC 101102", "accession": "GCA_007989805.1", "taxid": 233583, "species_taxid": 233583, "relation_to_type": "type", "validated": true, "ani": 78.7057, "matched_fragments": 528, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea subterranea", "strain": "strain=HO-Ch2", "accession": "GCA_008364845.1", "taxid": 2607497, "species_taxid": 2607497, "relation_to_type": "type", "validated": true, "ani": 78.647, "matched_fragments": 498, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora sukumoe", "strain": "strain=DSM 44121", "accession": "GCA_014137995.1", "taxid": 88382, "species_taxid": 88382, "relation_to_type": "type", "validated": true, "ani": 78.5475, "matched_fragments": 580, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002798015.1", "gtdb_species": "s__Luteimicrobium subarcticum", "ani": 100.0, "matched_fragments": 1201, "total_fragments": 1202, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Luteimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009429125.1", "gtdb_species": "s__Luteimicrobium xylanilyticum", "ani": 81.7491, "matched_fragments": 779, "total_fragments": 1202, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Luteimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002797595.1", "gtdb_species": "s__Sediminihabitans luteus", "ani": 80.2397, "matched_fragments": 610, "total_fragments": 1202, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Sediminihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_010287905.1", "gtdb_species": "s__Cellulosimicrobium fucosivorans", "ani": 80.004, "matched_fragments": 622, "total_fragments": 1202, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.84", "min_intra_species_ani": "98.55", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_003052455.1", "gtdb_species": "s__Cellulosimicrobium cinnabarinum", "ani": 79.9667, "matched_fragments": 633, "total_fragments": 1202, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium", "ani_circumscription_radius": 96.0261, "mean_intra_species_ani": "97.94", "min_intra_species_ani": "97.40", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_004519295.1", "gtdb_species": "s__Cellulosimicrobium funkei", "ani": 79.9176, "matched_fragments": 633, "total_fragments": 1202, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulosimicrobium", "ani_circumscription_radius": 96.0261, "mean_intra_species_ani": 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