{ "type": "genome", "identifier": "GCF_002802905.1", "organism": "Bifidobacterium simiarum", "title": "Bifidobacterium simiarum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Bologna", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002802905.1", "bioproject": "PRJNA224116", "biosample": "SAMN07795386", "wgs_master": "PEBK00000000.1", "refseq_category": "reference genome", "taxid": "2045441", "species_taxid": "2045441", "organism_name": "Bifidobacterium simiarum", "infraspecific_name": "strain=TRI 7", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/11/29", "asm_name": "ASM280290v1", "asm_submitter": "University of Bologna", "gbrs_paired_asm": "GCA_002802905.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/802/905/GCF_002802905.1_ASM280290v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2721281", "genome_size_ungapped": "2721281", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002802905.1-RS_2024_04_15", "annotation_date": "2024-04-15", "total_gene_count": "2147", "protein_coding_gene_count": "2046", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-11-29", "dateModified": "2017-11-29", "datePublished": "2017-11-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium simiarum" ], "sample_taxid": [ "2045441" ], "sample_host_organism": [ "Saguinus imperator" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: Bussolengo" ], "sample_host_location_id": [], "data_size": "0.752 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2721281", "Number of Sequences": "32", "Longest Sequences (bp)": "537996", "N50 (bp)": "292387", "Gap Ratio (%)": "0.001470", "GCcontent (%)": "63.8", "Number of CDSs": "2117", "Average Protein Length": "361.3", "Coding Ratio (%)": "84.3", "Number of rRNAs": "0", "Number of tRNAs": "59", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bifidobacterium simiarum", "strain": "strain=TRI 7", "accession": "GCA_002802905.1", "taxid": 2045441, "species_taxid": 2045441, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 895, "total_fragments": 895, 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