{ "type": "genome", "identifier": "GCF_002803295.2", "organism": "Caedibacter taeniospiralis", "title": "Caedibacter taeniospiralis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Saarland University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002803295.2", "bioproject": "PRJNA224116", "biosample": "SAMN08013485", "wgs_master": "PGGB00000000.2", "refseq_category": "reference genome", "taxid": "28907", "species_taxid": "28907", "organism_name": "Caedibacter taeniospiralis", "infraspecific_name": "strain=51K", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/18", "asm_name": "ASM280329v2", "asm_submitter": "Saarland University", "gbrs_paired_asm": "GCA_002803295.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/803/295/GCF_002803295.2_ASM280329v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1323505", "genome_size_ungapped": "1323105", "gc_percent": "41.500000", "replicon_count": "1", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002803295.2-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "1297", "protein_coding_gene_count": "1221", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-18", "dateModified": "2019-12-18", "datePublished": "2019-12-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Caedibacter taeniospiralis" ], "sample_taxid": [ "28907" ], "sample_host_organism": [ "Paramecium" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "0.379 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 70.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1323505", "Number of Sequences": "18", "Longest Sequences (bp)": "189643", "N50 (bp)": "95581", "Gap Ratio (%)": "0.032489", "GCcontent (%)": "41.5", "Number of CDSs": "1224", "Average Protein Length": "310.3", "Coding Ratio (%)": "86.1", "Number of rRNAs": "9", "Number of tRNAs": "36", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Caedibacter taeniospiralis", "strain": "strain=51K", "accession": "GCA_002803295.2", "taxid": 28907, "species_taxid": 28907, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 430, "total_fragments": 432, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Fastidiosibacter lacustris", "strain": "strain=NBRC 112274", "accession": "GCA_003428155.1", "taxid": 2056695, "species_taxid": 2056695, "relation_to_type": "type", "validated": true, "ani": 77.9348, "matched_fragments": 91, "total_fragments": 432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cysteiniphilum litorale", "strain": "strain=CGMCC 1.15758", "accession": "GCA_014643575.1", "taxid": 2056700, "species_taxid": 2056700, "relation_to_type": "type", "validated": true, "ani": 77.6658, "matched_fragments": 134, "total_fragments": 432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cysteiniphilum litorale", "strain": "strain=DSM 101832", "accession": "GCA_003428165.1", "taxid": 2056700, "species_taxid": 2056700, "relation_to_type": "type", "validated": true, "ani": 77.5323, "matched_fragments": 130, "total_fragments": 432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cysteiniphilum halobium", "strain": "strain=SYSU SYW-6", "accession": "GCA_003574425.1", "taxid": 2219059, "species_taxid": 2219059, "relation_to_type": "type", "validated": true, "ani": 77.48, "matched_fragments": 121, "total_fragments": 432, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 70.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002803295.2", "gtdb_species": "s__Caedibacter taeniospiralis", "ani": 100.0, "matched_fragments": 430, "total_fragments": 432, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Caedibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003428155.1", "gtdb_species": "s__Fastidiosibacter lacustris", "ani": 77.9348, "matched_fragments": 91, "total_fragments": 432, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Fastidiosibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014857925.1", "gtdb_species": "s__Cysteiniphilum marinum", "ani": 77.6708, "matched_fragments": 130, "total_fragments": 432, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Cysteiniphilum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.88", "min_intra_species_ani": "99.82", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_003428165.1", "gtdb_species": "s__Cysteiniphilum litorale", "ani": 77.5028, "matched_fragments": 133, "total_fragments": 432, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Cysteiniphilum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_008711525.1", "gtdb_species": "s__Cysteiniphilum sp008711525", "ani": 77.4994, "matched_fragments": 125, "total_fragments": 432, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Cysteiniphilum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003574425.1", "gtdb_species": "s__Cysteiniphilum halobium", "ani": 77.4557, "matched_fragments": 122, "total_fragments": 432, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Francisellales;f__Francisellaceae;g__Cysteiniphilum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.398, "cell_length": 0.0, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": 1930023.5, "gc_content": 37.919, "coding_genes": 1683.0, "rRNA16S_genes": null, "tRNA_genes": 42.0, "gram_stain": 0.0, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Caedibacter", "taeniospiralis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }