{
    "type": "genome",
    "identifier": "GCF_002803405.1",
    "organism": "Thomasclavelia cocleata",
    "title": "Thomasclavelia cocleata",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Nebraska-Lincoln",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002803405.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08042460",
        "wgs_master": "PHNQ00000000.1",
        "refseq_category": "na",
        "taxid": "69824",
        "species_taxid": "69824",
        "organism_name": "Thomasclavelia cocleata",
        "infraspecific_name": "strain=ATCC 29902",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/12/02",
        "asm_name": "ASM280340v1",
        "asm_submitter": "University of Nebraska-Lincoln",
        "gbrs_paired_asm": "GCA_002803405.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/803/405/GCF_002803405.1_ASM280340v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2952269",
        "genome_size_ungapped": "2947702",
        "gc_percent": "28.500000",
        "replicon_count": "0",
        "scaffold_count": "41",
        "contig_count": "41",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-05",
        "total_gene_count": "2989",
        "protein_coding_gene_count": "2811",
        "non_coding_gene_count": "64",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-12-02",
    "dateModified": "2017-12-02",
    "datePublished": "2017-12-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thomasclavelia cocleata"
        ],
        "sample_taxid": [
            "69824"
        ],
        "sample_host_organism": [
            "Mus musculus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.804 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2952269",
        "Number of Sequences": "41",
        "Longest Sequences (bp)": "358638",
        "N50 (bp)": "118946",
        "Gap Ratio (%)": "0.154695",
        "GCcontent (%)": "28.5",
        "Number of CDSs": "2986",
        "Average Protein Length": "276.3",
        "Coding Ratio (%)": "83.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "7"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "[Clostridium] cocleatum",
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                "accession": "GCA_002803405.1",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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            },
            {
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "[Clostridium] saccharogumia",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Clostridium] spiroforme",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Erysipelatoclostridium ramosum",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprobacillus cateniformis",
                "strain": "strain=JCM 10604",
                "accession": "GCA_001312445.1",
                "taxid": 100884,
                "species_taxid": 100884,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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        "gtdb_result": [
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                "accession": "GCF_900102365.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Erysipelatoclostridium",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
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        ]
    },
    "_bac2feature": {
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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    },
    "_genome_taxon": [
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        "cocleata"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}