{ "type": "genome", "identifier": "GCF_002803985.1", "organism": "Williamsoniiplasma luminosum", "title": "Williamsoniiplasma luminosum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Academia Sinica", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002803985.1", "bioproject": "PRJNA224116", "biosample": "SAMN05429629", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "214888", "species_taxid": "214888", "organism_name": "Williamsoniiplasma luminosum", "infraspecific_name": "strain=PIMN-1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/04", "asm_name": "ASM280398v1", "asm_submitter": "Academia Sinica", "gbrs_paired_asm": "GCA_002803985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/803/985/GCF_002803985.1_ASM280398v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1031560", "genome_size_ungapped": "1031560", "gc_percent": "30.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002803985.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "900", "protein_coding_gene_count": "861", "non_coding_gene_count": "38", "pubmed_id": "30102350;2223610" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-04", "dateModified": "2017-12-04", "datePublished": "2017-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Williamsoniiplasma luminosum" ], "sample_taxid": [ "214888" ], "sample_host_organism": [ "Photinus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "NA" ], "sample_host_location_id": [], "data_size": "0.278 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1031560", "Number of Sequences": "1", "Longest Sequences (bp)": "1031560", "N50 (bp)": "1031560", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.8", "Number of CDSs": "1771", "Average Protein Length": "128.0", "Coding Ratio (%)": "65.9", "Number of rRNAs": "3", "Number of tRNAs": "32", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Williamsoniiplasma luminosum", "strain": "strain=PIMN-1", "accession": "GCA_002803985.1", "taxid": 214888, "species_taxid": 214888, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 343, 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"status": "below_threshold" }, { "organism_name": "Mesoplasma florum", "strain": "strain=L1; ATCC 33453", "accession": "GCA_000008305.1", "taxid": 2151, "species_taxid": 2151, "relation_to_type": "type", "validated": true, "ani": 77.6424, "matched_fragments": 59, "total_fragments": 343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycoplasma leachii", "strain": "strain=PG50", "accession": "GCA_000183365.1", "taxid": 2105, "species_taxid": 2105, "relation_to_type": "type", "validated": true, "ani": 77.1868, "matched_fragments": 59, "total_fragments": 343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycoplasma mycoides subsp. mycoides", "strain": "strain=PG1", "accession": "GCA_000011445.1", "taxid": 2103, "species_taxid": 2102, "relation_to_type": "type", "validated": true, "ani": 77.0952, "matched_fragments": 63, "total_fragments": 343, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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