{ "type": "genome", "identifier": "GCF_002806975.1", "organism": "Marinobacter aromaticivorans", "title": "Marinobacter aromaticivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong Uniwersity at Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002806975.1", "bioproject": "PRJNA224116", "biosample": "SAMN07193047", "wgs_master": "NIHD00000000.1", "refseq_category": "reference genome", "taxid": "1494078", "species_taxid": "1494078", "organism_name": "Marinobacter aromaticivorans", "infraspecific_name": "strain=D15-8P", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/04", "asm_name": "ASM280697v1", "asm_submitter": "Shandong Uniwersity at Weihai", "gbrs_paired_asm": "GCA_002806975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/806/975/GCF_002806975.1_ASM280697v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4110204", "genome_size_ungapped": "4110204", "gc_percent": "56.000000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002806975.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "3799", "protein_coding_gene_count": "3695", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-04", "dateModified": "2017-12-04", "datePublished": "2017-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter aromaticivorans" ], "sample_taxid": [ "1494078" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:South Sea" ], "sample_host_location_id": [], "data_size": "1.170 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4110204", "Number of Sequences": "47", "Longest Sequences (bp)": "624860", "N50 (bp)": "280517", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.9", "Number of CDSs": "3744", "Average Protein Length": "329.4", "Coding Ratio (%)": "90.0", "Number of rRNAs": "2", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter aromaticivorans", "strain": "strain=D15-8P", "accession": "GCA_002806975.1", "taxid": 1494078, "species_taxid": 1494078, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1346, "total_fragments": 1349, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter maritimus", "strain": "strain=CK47", "accession": "GCA_007671675.1", "taxid": 277961, "species_taxid": 277961, "relation_to_type": "type", "validated": true, "ani": 81.6746, "matched_fragments": 857, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter antarcticus", "strain": "strain=CGMCC 1.10835", "accession": "GCA_900142385.1", "taxid": 564117, "species_taxid": 564117, "relation_to_type": "type", "validated": true, "ani": 81.4744, "matched_fragments": 807, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter salexigens", "strain": "strain=HJR7", "accession": "GCA_002806945.1", "taxid": 1925763, "species_taxid": 1925763, "relation_to_type": "type", "validated": true, "ani": 81.2739, "matched_fragments": 787, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter maroccanus", "strain": "strain=N4", "accession": "GCA_002933275.1", "taxid": 2055143, "species_taxid": 2055143, "relation_to_type": "type", "validated": true, "ani": 79.4727, "matched_fragments": 558, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis", "strain": "strain=SL013A34A2", "accession": "GCA_003007715.1", "taxid": 1389223, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 79.2235, "matched_fragments": 462, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 78.9757, "matched_fragments": 437, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 78.9711, "matched_fragments": 409, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter salinus", "strain": "strain=Hb8", "accession": "GCA_001854125.1", "taxid": 1874317, "species_taxid": 1874317, "relation_to_type": "type", "validated": true, "ani": 78.9575, "matched_fragments": 446, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 78.934, "matched_fragments": 479, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis subsp. alexandrii", "strain": "strain=LZ-6", "accession": "GCA_005871095.1", "taxid": 2570350, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 78.8805, "matched_fragments": 468, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter lipolyticus", "strain": "strain=SM19", "accession": "GCA_000397065.2", "taxid": 209639, "species_taxid": 209639, "relation_to_type": "type", "validated": true, "ani": 78.8603, "matched_fragments": 394, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guguanensis", "strain": "strain=JCM 18416", "accession": "GCA_900104265.1", "taxid": 1198456, "species_taxid": 1198456, "relation_to_type": "type", "validated": true, "ani": 76.3612, "matched_fragments": 74, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas songnenensis", "strain": "strain=DSM 27560T", "accession": "GCA_024448495.1", 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"gtdb_species": "s__Marinobacter aromaticivorans", "ani": 100.0, "matched_fragments": 1346, "total_fragments": 1349, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_007671675.1", "gtdb_species": "s__Marinobacter maritimus", "ani": 81.6746, "matched_fragments": 857, "total_fragments": 1349, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.91", "min_intra_species_ani": "98.91", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018066865.1", 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"s__Marinobacter sp016597815", "ani": 81.2901, "matched_fragments": 804, "total_fragments": 1349, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.88", "min_intra_species_ani": "97.88", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002806945.1", "gtdb_species": "s__Marinobacter salexigens", "ani": 81.279, "matched_fragments": 786, "total_fragments": 1349, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016597725.1", "gtdb_species": "s__Marinobacter sp016597725", 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"coccobacillus_cell_shape": 0.041, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Marinobacter", "aromaticivorans" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }