{ "type": "genome", "identifier": "GCF_002807035.1", "organism": "Algoriphagus formosus", "title": "Algoriphagus formosus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong Uniwersity at Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002807035.1", "bioproject": "PRJNA224116", "biosample": "SAMN07193049", "wgs_master": "NIUC00000000.1", "refseq_category": "reference genome", "taxid": "2007308", "species_taxid": "2007308", "organism_name": "Algoriphagus formosus", "infraspecific_name": "strain=XAY3209", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/04", "asm_name": "ASM280703v1", "asm_submitter": "Shandong Uniwersity at Weihai", "gbrs_paired_asm": "GCA_002807035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/807/035/GCF_002807035.1_ASM280703v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4492416", "genome_size_ungapped": "4492274", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002807035.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3961", "protein_coding_gene_count": "3895", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-04", "dateModified": "2017-12-04", "datePublished": "2017-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Algoriphagus formosus" ], "sample_taxid": [ "2007308" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Weihai, coastal area" ], "sample_host_location_id": [], "data_size": "1.272 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4492416", "Number of Sequences": "17", "Longest Sequences (bp)": "2112439", "N50 (bp)": "1351043", "Gap Ratio (%)": "0.003428", "GCcontent (%)": "41.9", "Number of CDSs": "3875", "Average Protein Length": "348.9", "Coding Ratio (%)": "90.3", "Number of rRNAs": "4", "Number of tRNAs": "40", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Algoriphagus formosus", "strain": "strain=XAY3209", "accession": "GCA_002807035.1", "taxid": 2007308, "species_taxid": 2007308, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1492, "total_fragments": 1493, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Algoriphagus aquimaris", "strain": "strain=F21", "accession": "GCA_004358035.1", "taxid": 2547398, "species_taxid": 2547398, "relation_to_type": "type", "validated": true, "ani": 97.542, "matched_fragments": 1335, "total_fragments": 1493, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Algoriphagus marincola", "strain": "strain=DSM 16067", "accession": "GCA_000429405.1", "taxid": 264027, "species_taxid": 264027, "relation_to_type": "type", "validated": true, "ani": 93.2422, "matched_fragments": 1267, "total_fragments": 1493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus faecimaris", "strain": "strain=JCM 16561", "accession": "GCA_002150585.1", "taxid": 686796, "species_taxid": 686796, "relation_to_type": "type", "validated": true, "ani": 78.5721, "matched_fragments": 381, "total_fragments": 1493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus kandeliae", "strain": "strain=XY-J91", "accession": "GCA_004571135.1", "taxid": 2562278, "species_taxid": 2562278, "relation_to_type": "type", "validated": true, "ani": 78.4538, "matched_fragments": 458, "total_fragments": 1493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus ornithinivorans", "strain": "strain=DSM 15282", "accession": "GCA_900115305.1", "taxid": 226506, "species_taxid": 226506, "relation_to_type": "type", "validated": true, "ani": 77.9814, "matched_fragments": 317, "total_fragments": 1493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus hitonicola", "strain": "strain=DSM 19315", "accession": "GCA_900113375.1", "taxid": 435880, "species_taxid": 435880, "relation_to_type": "type", "validated": true, "ani": 77.8232, "matched_fragments": 334, "total_fragments": 1493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus zhangzhouensis", "strain": "strain=CGMCC 1.11027", "accession": "GCA_004366575.1", "taxid": 1073327, "species_taxid": 1073327, "relation_to_type": "type", "validated": true, "ani": 77.3585, "matched_fragments": 291, "total_fragments": 1493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus zhangzhouensis", "strain": "strain=DSM 25035", "accession": "GCA_900148515.1", "taxid": 1073327, "species_taxid": 1073327, "relation_to_type": "type", "validated": true, "ani": 77.3547, "matched_fragments": 296, "total_fragments": 1493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus locisalis", "strain": "strain=DSM 23445", "accession": "GCA_900116615.1", "taxid": 305507, "species_taxid": 305507, "relation_to_type": "type", "validated": true, "ani": 76.9455, "matched_fragments": 154, "total_fragments": 1493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus 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"accession": "GCA_002150685.1", "taxid": 238540, "species_taxid": 238540, "relation_to_type": "type", "validated": true, "ani": 76.4621, "matched_fragments": 158, "total_fragments": 1493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium roseum", "strain": "strain=SYSU L10180", "accession": "GCA_010119225.1", "taxid": 2666137, "species_taxid": 2666137, "relation_to_type": "type", "validated": true, "ani": 76.3353, "matched_fragments": 53, "total_fragments": 1493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium salsum", "strain": "strain=SYSU L10167", "accession": "GCA_010119245.1", "taxid": 2666329, "species_taxid": 2666329, "relation_to_type": "type", "validated": true, "ani": 76.1759, "matched_fragments": 65, "total_fragments": 1493, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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