{ "type": "genome", "identifier": "GCF_002807665.1", "organism": "Alteromonas facilis", "title": "Alteromonas facilis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University,Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002807665.1", "bioproject": "PRJNA224116", "biosample": "SAMN07816203", "wgs_master": "PEAY00000000.1", "refseq_category": "reference genome", "taxid": "2048004", "species_taxid": "2048004", "organism_name": "Alteromonas facilis", "infraspecific_name": "strain=P0213", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/04", "asm_name": "ASM280766v1", "asm_submitter": "Shandong University,Weihai", "gbrs_paired_asm": "GCA_002807665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/807/665/GCF_002807665.1_ASM280766v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3914585", "genome_size_ungapped": "3914585", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002807665.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3570", "protein_coding_gene_count": "3486", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-04", "dateModified": "2017-12-04", "datePublished": "2017-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteromonas facilis" ], "sample_taxid": [ "2048004" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Rongcheng" ], "sample_host_location_id": [], "data_size": "1.120 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3914585", "Number of Sequences": "23", "Longest Sequences (bp)": "1340369", "N50 (bp)": "687814", "Gap Ratio (%)": "0.000128", "GCcontent (%)": "44.7", "Number of CDSs": "3499", "Average Protein Length": "337.7", "Coding Ratio (%)": "90.6", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alteromonas facilis", "strain": "strain=P0213", "accession": "GCA_002807665.1", "taxid": 2048004, "species_taxid": 2048004, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1296, "total_fragments": 1297, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alteromonas flava", "strain": "strain=P0211", "accession": "GCA_002807685.1", "taxid": 2048003, "species_taxid": 2048003, "relation_to_type": "type", "validated": true, "ani": 79.507, "matched_fragments": 332, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas alba", "strain": "strain=190", "accession": "GCA_002993365.1", "taxid": 2079529, "species_taxid": 2079529, "relation_to_type": "type", "validated": true, "ani": 78.8687, "matched_fragments": 112, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinimonas lutimaris", "strain": "strain=DPSR-4", "accession": "GCA_005222225.1", "taxid": 914153, "species_taxid": 914153, "relation_to_type": "type", "validated": true, "ani": 78.7082, "matched_fragments": 78, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas abrolhosensis", "strain": "strain=PEL67E", "accession": "GCA_001953635.1", "taxid": 1892904, "species_taxid": 1892904, "relation_to_type": "type", "validated": true, "ani": 78.5585, "matched_fragments": 94, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas gracilis", "strain": "strain=9a2", "accession": "GCA_002993325.1", "taxid": 1479524, "species_taxid": 1479524, "relation_to_type": "type", "validated": true, "ani": 78.5059, "matched_fragments": 94, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinimonas iocasae", "strain": "strain=KX18D6", "accession": "GCA_006228385.1", "taxid": 2572577, "species_taxid": 2572577, "relation_to_type": "type", "validated": true, "ani": 78.4965, "matched_fragments": 80, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas macleodii", "strain": "strain=ATCC 27126", "accession": "GCA_000172635.2", "taxid": 28108, 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"status": "-" }, { "accession": "GCF_000155775.1", "gtdb_species": "s__Glaciecola sp000155775", "ani": 78.8533, "matched_fragments": 63, "total_fragments": 1297, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Glaciecola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005222225.1", "gtdb_species": "s__Alteromonas lutimaris", "ani": 78.7082, "matched_fragments": 78, "total_fragments": 1297, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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