{ "type": "genome", "identifier": "GCF_002807685.1", "organism": "Alteromonas flava", "title": "Alteromonas flava", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University,Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002807685.1", "bioproject": "PRJNA224116", "biosample": "SAMN07816183", "wgs_master": "PEAX00000000.1", "refseq_category": "reference genome", "taxid": "2048003", "species_taxid": "2048003", "organism_name": "Alteromonas flava", "infraspecific_name": "strain=P0211", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/04", "asm_name": "ASM280768v1", "asm_submitter": "Shandong University,Weihai", "gbrs_paired_asm": "GCA_002807685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/807/685/GCF_002807685.1_ASM280768v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3646037", "genome_size_ungapped": "3646037", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002807685.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3396", "protein_coding_gene_count": "3319", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-04", "dateModified": "2017-12-04", "datePublished": "2017-12-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteromonas flava" ], "sample_taxid": [ "2048003" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Rongcheng" ], "sample_host_location_id": [], "data_size": "1.043 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3646037", "Number of Sequences": "42", "Longest Sequences (bp)": "902613", "N50 (bp)": "488695", "Gap Ratio (%)": "0.000055", "GCcontent (%)": "45.7", "Number of CDSs": "3344", "Average Protein Length": "328.6", "Coding Ratio (%)": "90.4", "Number of rRNAs": "5", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alteromonas flava", "strain": "strain=P0211", "accession": "GCA_002807685.1", "taxid": 2048003, "species_taxid": 2048003, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1200, "total_fragments": 1201, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alteromonas facilis", "strain": "strain=P0213", "accession": "GCA_002807665.1", "taxid": 2048004, "species_taxid": 2048004, "relation_to_type": "type", "validated": true, "ani": 79.6864, "matched_fragments": 325, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas gracilis", "strain": "strain=9a2", "accession": "GCA_002993325.1", "taxid": 1479524, "species_taxid": 1479524, "relation_to_type": "type", "validated": true, "ani": 78.9315, "matched_fragments": 81, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas sediminis", "strain": "strain=U0105", "accession": "GCA_003820355.1", "taxid": 2259342, "species_taxid": 2259342, "relation_to_type": "type", "validated": true, "ani": 78.4562, "matched_fragments": 77, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas oceanisediminis", "strain": "strain=SM 2104", "accession": "GCA_018474025.1", "taxid": 2836180, "species_taxid": 2836180, "relation_to_type": "type", "validated": true, "ani": 78.4379, "matched_fragments": 147, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas abrolhosensis", "strain": "strain=PEL67E", "accession": "GCA_001953635.1", "taxid": 1892904, "species_taxid": 1892904, "relation_to_type": "type", "validated": true, "ani": 78.2984, "matched_fragments": 90, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas lipolytica", "strain": "strain=JW12", "accession": "GCA_001758465.1", "taxid": 1856405, "species_taxid": 1856405, "relation_to_type": "type", "validated": true, "ani": 78.1142, "matched_fragments": 87, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas genovensis", "strain": "strain=LMG 24078", "accession": "GCA_010500895.1", "taxid": 471225, "species_taxid": 471225, "relation_to_type": "type", "validated": true, "ani": 77.819, "matched_fragments": 83, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraneptunicella aestuarii", "strain": "strain=NBU2194", "accession": "GCA_019900845.1", "taxid": 2831148, "species_taxid": 2831148, "relation_to_type": "type", "validated": true, "ani": 77.7229, "matched_fragments": 57, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas halophila", "strain": "strain=KCTC 22164", "accession": "GCA_014651815.1", "taxid": 516698, "species_taxid": 516698, "relation_to_type": "type", "validated": true, "ani": 77.7073, "matched_fragments": 74, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas lipolytica", "strain": "strain=CGMCC 1.15735", "accession": "GCA_014643555.1", "taxid": 1856405, 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