{ "type": "genome", "identifier": "GCF_002811245.1", "organism": "Vibrio salilacus", "title": "Vibrio salilacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute for Communicable Disease Control and Prevention, China CDC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002811245.1", "bioproject": "PRJNA224116", "biosample": "SAMN07212053", "wgs_master": "NIVQ00000000.1", "refseq_category": "reference genome", "taxid": "1323749", "species_taxid": "1323749", "organism_name": "Vibrio salilacus", "infraspecific_name": "strain=DSG-S6", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/05", "asm_name": "ASM281124v1", "asm_submitter": "National Institute for Communicable Disease Control and Prevention, China CDC", "gbrs_paired_asm": "GCA_002811245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/811/245/GCF_002811245.1_ASM281124v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3619996", "genome_size_ungapped": "3619996", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "93", "contig_count": "93", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002811245.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3346", "protein_coding_gene_count": "3204", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-05", "dateModified": "2017-12-05", "datePublished": "2017-12-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio salilacus" ], "sample_taxid": [ "1323749" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Qinghai Province" ], "sample_host_location_id": [], "data_size": "1.040 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3619996", "Number of Sequences": "93", "Longest Sequences (bp)": "336647", "N50 (bp)": "149445", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.1", "Number of CDSs": "3225", "Average Protein Length": "322.8", "Coding Ratio (%)": "86.3", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio salilacus", "strain": "strain=DSG-S6", "accession": "GCA_002811245.1", "taxid": 1323749, "species_taxid": 1323749, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nereis", "strain": "strain=DSM 19584", "accession": "GCA_001274805.1", "taxid": 693, "species_taxid": 693, "relation_to_type": "type", "validated": true, "ani": 80.1512, "matched_fragments": 433, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nereis", "strain": "strain=NBRC 15637", "accession": "GCA_001591105.1", "taxid": 693, "species_taxid": 693, "relation_to_type": "type", "validated": true, "ani": 80.0802, "matched_fragments": 437, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio scophthalmi", "strain": "strain=LMG 19158", "accession": "GCA_000222585.2", "taxid": 45658, "species_taxid": 45658, "relation_to_type": "type", "validated": true, "ani": 79.7347, "matched_fragments": 378, "total_fragments": 1160, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio 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