{ "type": "genome", "identifier": "GCF_002811705.1", "organism": "Streptomyces barkulensis", "title": "Streptomyces barkulensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KIIT School of Biotechnology, KIIT University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002811705.1", "bioproject": "PRJNA224116", "biosample": "SAMN04572158", "wgs_master": "PDKQ00000000.2", "refseq_category": "na", "taxid": "1257026", "species_taxid": "1257026", "organism_name": "Streptomyces barkulensis", "infraspecific_name": "strain=RC 1831", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/18", "asm_name": "ASM281170v2", "asm_submitter": "KIIT School of Biotechnology, KIIT University", "gbrs_paired_asm": "GCA_002811705.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/811/705/GCF_002811705.1_ASM281170v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6383258", "genome_size_ungapped": "6367906", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "100", "contig_count": "100", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002811705.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "5875", "protein_coding_gene_count": "5568", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-18", "dateModified": "2020-03-18", "datePublished": "2020-03-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces barkulensis" ], "sample_taxid": [ "1257026" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Chilika Lake, Odisha" ], "sample_host_location_id": [], "data_size": "1.704 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6383258", "Number of Sequences": "100", "Longest Sequences (bp)": "358823", "N50 (bp)": "158509", "Gap Ratio (%)": "0.240504", "GCcontent (%)": "72.9", "Number of CDSs": "5853", "Average Protein Length": "314.3", "Coding Ratio (%)": "86.5", "Number of rRNAs": "2", "Number of tRNAs": "81", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces barkulensis", "strain": "strain=RC 1831", "accession": "GCA_002811705.2", "taxid": 1257026, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces thermodiastaticus", "strain": "strain=DSM 40573", "accession": "GCA_021394575.1", "taxid": 44061, "species_taxid": 44061, "relation_to_type": "type", "validated": true, "ani": 81.0575, "matched_fragments": 1023, "total_fragments": 2079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rimosus subsp. rimosus", "strain": "strain=R7", "accession": "GCA_022760195.1", "taxid": 132474, "species_taxid": 1927, "relation_to_type": "type", "validated": true, "ani": 80.892, "matched_fragments": 1133, "total_fragments": 2079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cacaoi", "strain": "strain=NRRL B-1220", "accession": "GCA_002154495.1", "taxid": 1898, "species_taxid": 1898, "relation_to_type": "type", "validated": true, "ani": 80.5575, "matched_fragments": 927, "total_fragments": 2079, "ani_threshold": 95, "status": "below_threshold" 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