{
    "type": "genome",
    "identifier": "GCF_002811925.1",
    "organism": "Leptospira barantonii",
    "title": "Leptospira barantonii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut Pasteur Montevideo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002811925.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07411424",
        "wgs_master": "NPDS00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2023184",
        "species_taxid": "2023184",
        "organism_name": "Leptospira barantonii",
        "infraspecific_name": "strain=FH4-C-A1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/12/05",
        "asm_name": "ASM281192v1",
        "asm_submitter": "Institut Pasteur Montevideo",
        "gbrs_paired_asm": "GCA_002811925.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/811/925/GCF_002811925.1_ASM281192v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4392226",
        "genome_size_ungapped": "4392226",
        "gc_percent": "44.000000",
        "replicon_count": "0",
        "scaffold_count": "17",
        "contig_count": "17",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002811925.1-RS_2024_04_22",
        "annotation_date": "2024-04-22",
        "total_gene_count": "4042",
        "protein_coding_gene_count": "3962",
        "non_coding_gene_count": "43",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-12-05",
    "dateModified": "2017-12-05",
    "datePublished": "2017-12-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Leptospira barantonii"
        ],
        "sample_taxid": [
            "2023184"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "New Caledonia"
        ],
        "sample_host_location_id": [],
        "data_size": "1.225 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4392226",
        "Number of Sequences": "17",
        "Longest Sequences (bp)": "977769",
        "N50 (bp)": "347630",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.0",
        "Number of CDSs": "3998",
        "Average Protein Length": "330.8",
        "Coding Ratio (%)": "90.3",
        "Number of rRNAs": "4",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Leptospira barantonii",
                "strain": "strain=FH4-C-A1",
                "accession": "GCA_002811925.1",
                "taxid": 2023184,
                "species_taxid": 2023184,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1454,
                "total_fragments": 1456,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leptospira kmetyi",
                "strain": "strain=Bejo-Iso9",
                "accession": "GCA_000243735.3",
                "taxid": 408139,
                "species_taxid": 408139,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.9581,
                "matched_fragments": 1347,
                "total_fragments": 1456,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira yasudae",
                "strain": "strain=F1",
                "accession": "GCA_003545925.1",
                "taxid": 2202201,
                "species_taxid": 2202201,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.852,
                "matched_fragments": 1176,
                "total_fragments": 1456,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira alstonii",
                "strain": "strain=79601",
                "accession": "GCA_000347175.1",
                "taxid": 28452,
                "species_taxid": 28452,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5385,
                "matched_fragments": 953,
                "total_fragments": 1456,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira adleri",
                "strain": "strain=FH2-B-D1",
                "accession": "GCA_002811985.1",
                "taxid": 2023186,
                "species_taxid": 2023186,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4105,
                "matched_fragments": 971,
                "total_fragments": 1456,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira tipperaryensis",
                "strain": "strain=GWTS #1",
                "accession": "GCA_001729245.1",
                "taxid": 2564040,
                "species_taxid": 2564040,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.331,
                "matched_fragments": 1030,
                "total_fragments": 1456,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira santarosai",
                "strain": "strain=LT 821",
                "accession": "GCA_000313175.2",
                "taxid": 28183,
                "species_taxid": 28183,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9936,
                "matched_fragments": 826,
                "total_fragments": 1456,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira borgpetersenii",
                "strain": "strain=DSM 21538",
                "accession": "GCA_003046425.1",
                "taxid": 174,
                "species_taxid": 174,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6008,
                "matched_fragments": 774,
                "total_fragments": 1456,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira ellisii",
                "strain": "strain=ATI7-C-A5",
                "accession": "GCA_002811955.1",
                "taxid": 2023197,
                "species_taxid": 2023197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3065,
                "matched_fragments": 723,
                "total_fragments": 1456,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002811925.1",
                "gtdb_species": "s__Leptospira barantonii",
                "ani": 100.0,
                "matched_fragments": 1454,
                "total_fragments": 1456,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.36",
                "min_intra_species_ani": "96.36",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000243735.2",
                "gtdb_species": "s__Leptospira kmetyi",
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                "matched_fragments": 1347,
                "total_fragments": 1456,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.04",
                "min_intra_species_ani": "98.99",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_003545925.1",
                "gtdb_species": "s__Leptospira yasudae",
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                "matched_fragments": 1174,
                "total_fragments": 1456,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.33",
                "min_intra_species_ani": "95.78",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_000347175.1",
                "gtdb_species": "s__Leptospira alstonii",
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira",
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                "mean_intra_species_ani": "99.79",
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                "num_clustered_genomes": 5,
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            },
            {
                "accession": "GCF_000332415.1",
                "gtdb_species": "s__Leptospira weilii_A",
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                "total_fragments": 1456,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_002811985.1",
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                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCF_002811955.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "ani": 80.2818,
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                "num_clustered_genomes": 4,
                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.1,
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    "_genome_taxon": [
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        "barantonii"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}