{
    "type": "genome",
    "identifier": "GCF_002811985.1",
    "organism": "Leptospira adleri",
    "title": "Leptospira adleri",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut Pasteur Montevideo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002811985.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07411422",
        "wgs_master": "NPDU00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2023186",
        "species_taxid": "2023186",
        "organism_name": "Leptospira adleri",
        "infraspecific_name": "strain=FH2-B-D1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/12/05",
        "asm_name": "ASM281198v1",
        "asm_submitter": "Institut Pasteur Montevideo",
        "gbrs_paired_asm": "GCA_002811985.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/811/985/GCF_002811985.1_ASM281198v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4826170",
        "genome_size_ungapped": "4826076",
        "gc_percent": "43.500000",
        "replicon_count": "0",
        "scaffold_count": "170",
        "contig_count": "170",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002811985.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "4444",
        "protein_coding_gene_count": "4284",
        "non_coding_gene_count": "45",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-12-05",
    "dateModified": "2017-12-05",
    "datePublished": "2017-12-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Leptospira adleri"
        ],
        "sample_taxid": [
            "2023186"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "New Caledonia"
        ],
        "sample_host_location_id": [],
        "data_size": "1.356 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4826170",
        "Number of Sequences": "170",
        "Longest Sequences (bp)": "175409",
        "N50 (bp)": "61157",
        "Gap Ratio (%)": "0.001948",
        "GCcontent (%)": "43.6",
        "Number of CDSs": "4200",
        "Average Protein Length": "314.8",
        "Coding Ratio (%)": "82.2",
        "Number of rRNAs": "4",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Leptospira adleri",
                "strain": "strain=FH2-B-D1",
                "accession": "GCA_002811985.1",
                "taxid": 2023186,
                "species_taxid": 2023186,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1520,
                "total_fragments": 1526,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leptospira ainazelensis",
                "strain": "strain=201903071",
                "accession": "GCA_016918785.1",
                "taxid": 2810034,
                "species_taxid": 2810034,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9492,
                "matched_fragments": 1239,
                "total_fragments": 1526,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira tipperaryensis",
                "strain": "strain=GWTS #1",
                "accession": "GCA_001729245.1",
                "taxid": 2564040,
                "species_taxid": 2564040,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9443,
                "matched_fragments": 1256,
                "total_fragments": 1526,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira ainlahdjerensis",
                "strain": "strain=201903070",
                "accession": "GCA_016919175.1",
                "taxid": 2810033,
                "species_taxid": 2810033,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3922,
                "matched_fragments": 1211,
                "total_fragments": 1526,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira kmetyi",
                "strain": "strain=Bejo-Iso9",
                "accession": "GCA_000243735.3",
                "taxid": 408139,
                "species_taxid": 408139,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5599,
                "matched_fragments": 973,
                "total_fragments": 1526,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira barantonii",
                "strain": "strain=FH4-C-A1",
                "accession": "GCA_002811925.1",
                "taxid": 2023184,
                "species_taxid": 2023184,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3281,
                "matched_fragments": 973,
                "total_fragments": 1526,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptospira yasudae",
                "strain": "strain=F1",
                "accession": "GCA_003545925.1",
                "taxid": 2202201,
                "species_taxid": 2202201,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0598,
                "matched_fragments": 937,
                "total_fragments": 1526,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002811985.1",
                "gtdb_species": "s__Leptospira adleri",
                "ani": 100.0,
                "matched_fragments": 1520,
                "total_fragments": 1526,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.11",
                "min_intra_species_ani": "98.26",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003545875.1",
                "gtdb_species": "s__Leptospira stimsonii_A",
                "ani": 85.0091,
                "matched_fragments": 1265,
                "total_fragments": 1526,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira",
                "ani_circumscription_radius": 95.7414,
                "mean_intra_species_ani": "99.10",
                "min_intra_species_ani": "99.09",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003545885.1",
                "gtdb_species": "s__Leptospira stimsonii",
                "ani": 84.978,
                "matched_fragments": 1235,
                "total_fragments": 1526,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira",
                "ani_circumscription_radius": 95.7414,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001729245.1",
                "gtdb_species": "s__Leptospira tipperaryensis",
                "ani": 84.9592,
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                "total_fragments": 1526,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016918785.1",
                "gtdb_species": "s__Leptospira sp016918785",
                "ani": 84.9428,
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                "total_fragments": 1526,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016919175.1",
                "gtdb_species": "s__Leptospira sp016919175",
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                "matched_fragments": 1211,
                "total_fragments": 1526,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.8,
        "cell_length": 0.954,
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        "growth_tmp": 29.846,
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        "coding_genes": 3721.42,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 36.694,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.1,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Leptospira",
        "adleri"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}