{ "type": "genome", "identifier": "GCF_002812705.1", "organism": "Achromobacter spanius", "title": "Achromobacter spanius", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Branch of National Rice Improvement Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002812705.1", "bioproject": "PRJNA224116", "biosample": "SAMN08043154", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "217203", "species_taxid": "217203", "organism_name": "Achromobacter spanius", "infraspecific_name": "strain=DSM 23806", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/06", "asm_name": "ASM281270v1", "asm_submitter": "Branch of National Rice Improvement Center", "gbrs_paired_asm": "GCA_002812705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/812/705/GCF_002812705.1_ASM281270v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6425783", "genome_size_ungapped": "6425783", "gc_percent": "64.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002812705.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "5839", "protein_coding_gene_count": "5720", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-06", "dateModified": "2017-12-06", "datePublished": "2017-12-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Achromobacter spanius" ], "sample_taxid": [ "217203" ], "sample_host_organism": [ "none" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "none" ], "sample_host_location_id": [], "data_size": "1.768 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6425783", "Number of Sequences": "1", "Longest Sequences (bp)": "6425783", "N50 (bp)": "6425783", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.3", "Number of CDSs": "5822", "Average Protein Length": "332.2", "Coding Ratio (%)": "90.3", "Number of rRNAs": "10", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Achromobacter spanius", "strain": "strain=DSM 23806", "accession": "GCA_002812705.1", "taxid": 217203, "species_taxid": 217203, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 2140, "total_fragments": 2141, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter spanius", "strain": "strain=LMG 5911", "accession": "GCA_902859605.1", "taxid": 217203, "species_taxid": 217203, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9776, "matched_fragments": 2090, "total_fragments": 2141, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter piechaudii", "strain": "strain=NBRC 102461", "accession": "GCA_001571245.1", "taxid": 72556, "species_taxid": 72556, "relation_to_type": "type", "validated": true, "ani": 88.3628, "matched_fragments": 1720, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter piechaudii", "strain": "strain=LMG 1873", "accession": "GCA_902859685.1", "taxid": 72556, "species_taxid": 72556, "relation_to_type": "type", "validated": true, "ani": 88.332, "matched_fragments": 1731, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter kerstersii", "strain": "strain=LMG 3441", "accession": "GCA_902859595.1", "taxid": 1353890, "species_taxid": 1353890, "relation_to_type": "type", "validated": true, "ani": 87.5706, "matched_fragments": 1684, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter marplatensis", "strain": "strain=B2", "accession": "GCA_002209535.1", "taxid": 470868, "species_taxid": 470868, "relation_to_type": "type", "validated": true, "ani": 87.2621, "matched_fragments": 1583, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter marplatensis", "strain": "strain=CECT 7342", "accession": "GCA_003315095.1", "taxid": 470868, "species_taxid": 470868, "relation_to_type": "type", "validated": true, "ani": 87.2613, "matched_fragments": 1611, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter pestifer", "strain": "strain=LMG 3431", "accession": "GCA_902859625.1", "taxid": 1353889, "species_taxid": 1353889, "relation_to_type": "type", "validated": true, "ani": 86.3025, "matched_fragments": 1583, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=PartM-Axylosoxidans-RM8376", "accession": "GCA_022870085.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 85.0184, "matched_fragments": 1457, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insolitus", "strain": "strain=NCTC 13520", "accession": "GCA_024168865.1", "taxid": 217204, "species_taxid": 217204, "relation_to_type": "type", "validated": true, "ani": 84.6172, "matched_fragments": 1372, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=CCUG 219", "accession": "GCA_021391275.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 81.5926, "matched_fragments": 813, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eoetvoesia caeni", "strain": "strain=PB3-7B", "accession": "GCA_022688825.1", "taxid": 645616, "species_taxid": 645616, "relation_to_type": "type", "validated": true, "ani": 78.4468, "matched_fragments": 343, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus numazuensis", "strain": "strain=LMG 26411", "accession": "GCA_905397435.1", "taxid": 221992, "species_taxid": 221992, "relation_to_type": "type", "validated": true, "ani": 77.3873, "matched_fragments": 441, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudobythopirellula maris", "strain": "strain=Mal64", "accession": "GCA_007859945.1", "taxid": 2527991, "species_taxid": 2527991, "relation_to_type": "type", "validated": true, "ani": 74.7445, "matched_fragments": 54, "total_fragments": 2141, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_002812705.1", "gtdb_species": "s__Achromobacter spanius", "ani": 100.0, "matched_fragments": 2139, "total_fragments": 2141, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_003994415.1", "gtdb_species": "s__Achromobacter spanius_C", "ani": 93.3475, "matched_fragments": 1845, "total_fragments": 2141, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.60", "min_intra_species_ani": "98.60", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003600685.1", "gtdb_species": "s__Achromobacter spanius_B", "ani": 88.796, "matched_fragments": 1727, "total_fragments": 2141, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.56", "min_intra_species_ani": "98.20", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001571245.1", "gtdb_species": "s__Achromobacter piechaudii", "ani": 88.3709, "matched_fragments": 1719, "total_fragments": 2141, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002209535.1", "gtdb_species": "s__Achromobacter marplatensis", "ani": 87.2621, "matched_fragments": 1583, "total_fragments": 2141, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.15", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002975275.1", "gtdb_species": "s__Achromobacter sp002975275", "ani": 86.8199, "matched_fragments": 1583, "total_fragments": 2141, "gtdb_taxonomy": 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64.95, "coding_genes": 5641.0, "rRNA16S_genes": 3.5, "tRNA_genes": 56.5, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.75, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Achromobacter", "spanius" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }