{ "tc_result": [ { "organism_name": "Bifidobacterium psychraerophilum", "strain": "strain=DSM 22366", "accession": "GCA_002813205.1", "taxid": 218140, "species_taxid": 218140, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 876, "total_fragments": 877, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium psychraerophilum", "strain": "strain=LMG 21775", "accession": "GCA_000741705.1", "taxid": 218140, "species_taxid": 218140, "relation_to_type": "type", "validated": true, "ani": 99.9821, "matched_fragments": 864, "total_fragments": 877, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium psychraerophilum", "strain": "strain=DSM 22366", "accession": "GCA_000771565.1", "taxid": 218140, "species_taxid": 218140, "relation_to_type": "type", "validated": true, "ani": 99.9593, "matched_fragments": 842, "total_fragments": 877, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium crudilactis", "strain": "strain=LMG 23609", "accession": "GCA_000738005.1", "taxid": 327277, "species_taxid": 327277, "relation_to_type": "type", "validated": true, "ani": 81.0474, "matched_fragments": 387, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium scardovii", "strain": "strain=DSM 13734", "accession": "GCA_001005065.1", "taxid": 158787, "species_taxid": 158787, "relation_to_type": "type", "validated": true, "ani": 77.7586, "matched_fragments": 162, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium scardovii", "strain": "strain=DSM 13734", "accession": "GCA_000770985.1", "taxid": 158787, "species_taxid": 158787, "relation_to_type": "type", "validated": true, "ani": 77.7089, "matched_fragments": 158, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium dentium", "strain": "strain=JCM 1195", "accession": "GCA_001042595.1", "taxid": 1689, "species_taxid": 1689, "relation_to_type": "type", "validated": true, "ani": 77.6769, "matched_fragments": 151, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium leontopitheci", "strain": "strain=LMG 31471", "accession": "GCA_009193355.1", "taxid": 2650774, "species_taxid": 2650774, "relation_to_type": "type", "validated": true, "ani": 77.6199, "matched_fragments": 144, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium lemurum", "strain": "strain=DSM 28807", "accession": "GCA_002259665.1", "taxid": 1603886, "species_taxid": 1603886, "relation_to_type": "type", "validated": true, "ani": 77.575, "matched_fragments": 174, "total_fragments": 877, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": 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"-" }, { "accession": "GCF_000741775.1", "gtdb_species": "s__Bifidobacterium subtile", "ani": 78.941, "matched_fragments": 169, "total_fragments": 877, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002259795.1", "gtdb_species": "s__Bifidobacterium aquikefiri", "ani": 78.7967, "matched_fragments": 136, "total_fragments": 877, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000741285.1", "gtdb_species": "s__Bifidobacterium mongoliense", "ani": 78.515, "matched_fragments": 156, "total_fragments": 877, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.45", "min_intra_species_ani": "98.93", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001042635.1", "gtdb_species": "s__Bifidobacterium scardovii", "ani": 78.0244, "matched_fragments": 164, "total_fragments": 877, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.51", "min_intra_species_ani": "98.97", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.93", "num_clustered_genomes": 7, "status": "-" }, { "accession": 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"gtdb_species": "s__Bifidobacterium sp012932675", "ani": 77.4105, "matched_fragments": 149, "total_fragments": 877, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009299505.1", "gtdb_species": "s__Bifidobacterium ramosum", "ani": 77.3899, "matched_fragments": 142, "total_fragments": 877, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_010667615.1", "gtdb_species": "s__Bifidobacterium choloepi", "ani": 77.3758, "matched_fragments": 112, "total_fragments": 877, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }