{ "type": "genome", "identifier": "GCF_002813245.1", "organism": "Novosphingobium kunmingense", "title": "Novosphingobium kunmingense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002813245.1", "bioproject": "PRJNA224116", "biosample": "SAMN06296206", "wgs_master": "PHUF00000000.1", "refseq_category": "reference genome", "taxid": "1211806", "species_taxid": "1211806", "organism_name": "Novosphingobium kunmingense", "infraspecific_name": "strain=CGMCC 1.12274", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/06", "asm_name": "ASM281324v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_002813245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/813/245/GCF_002813245.1_ASM281324v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3495912", "genome_size_ungapped": "3495912", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002813245.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3411", "protein_coding_gene_count": "3336", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-06", "dateModified": "2017-12-06", "datePublished": "2017-12-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Novosphingobium kunmingense" ], "sample_taxid": [ "1211806" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.961 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3495912", "Number of Sequences": "10", "Longest Sequences (bp)": "1233880", "N50 (bp)": "696896", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.7", "Number of CDSs": "3379", "Average Protein Length": "320.8", "Coding Ratio (%)": "93.0", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingobium kunmingense", "strain": "strain=CGMCC 1.12274", "accession": "GCA_002813245.1", "taxid": 1211806, "species_taxid": 1211806, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1161, "total_fragments": 1161, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Novosphingobium arvoryzae", "strain": "strain=KCTC 32422", "accession": "GCA_014652615.1", "taxid": 1256514, "species_taxid": 1256514, "relation_to_type": "type", "validated": true, "ani": 80.6299, "matched_fragments": 594, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aromaticivorans", "strain": "strain=DSM 12444", "accession": "GCA_000013325.1", "taxid": 48935, "species_taxid": 48935, "relation_to_type": "type", "validated": true, "ani": 80.5803, "matched_fragments": 530, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium ginsenosidimutans", "strain": "strain=FW-6", "accession": "GCA_007954425.1", "taxid": 1176536, "species_taxid": 1176536, "relation_to_type": "type", "validated": true, "ani": 80.4978, "matched_fragments": 535, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aerophilum", "strain": "strain=4Y4", "accession": "GCA_014230305.1", "taxid": 2839843, "species_taxid": 2839843, "relation_to_type": "type", "validated": true, "ani": 80.2872, "matched_fragments": 511, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium piscinae", "strain": "strain=KCTC 42194", "accession": "GCA_014230355.1", "taxid": 1507448, "species_taxid": 1507448, "relation_to_type": "type", "validated": true, "ani": 80.1957, "matched_fragments": 482, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium huizhouense", "strain": "strain=c7", "accession": "GCA_020179475.1", "taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 80.157, "matched_fragments": 513, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium flavum", "strain": "strain=NBRC 111647", "accession": "GCA_014230315.1", "taxid": 1778672, "species_taxid": 1778672, "relation_to_type": "type", "validated": true, "ani": 80.1423, "matched_fragments": 479, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", "accession": "GCA_020179425.1", "taxid": 2871811, "species_taxid": 2871811, "relation_to_type": "type", "validated": true, "ani": 79.9593, "matched_fragments": 531, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium jiangmenense", "strain": "strain=1Y9A", "accession": "GCA_015694345.1", "taxid": 2791981, "species_taxid": 2791981, "relation_to_type": "type", "validated": true, "ani": 79.571, "matched_fragments": 486, "total_fragments": 1161, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium 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