{ "type": "genome", "identifier": "GCF_002813445.1", "organism": "Pseudomonas tolaasii NCPPB 2192", "title": "Pseudomonas tolaasii NCPPB 2192", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002813445.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488246", "wgs_master": "PHHD00000000.1", "refseq_category": "reference genome", "taxid": "564423", "species_taxid": "29442", "organism_name": "Pseudomonas tolaasii NCPPB 2192", "infraspecific_name": "strain=NCPPB 2192", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/06", "asm_name": "ASM281344v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_002813445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/813/445/GCF_002813445.1_ASM281344v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6792797", "genome_size_ungapped": "6792797", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002813445.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "6150", "protein_coding_gene_count": "5992", "non_coding_gene_count": "87", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-06", "dateModified": "2017-12-06", "datePublished": "2017-12-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas tolaasii NCPPB 2192" ], "sample_taxid": [ "564423" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.892 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6792797", "Number of Sequences": "1", "Longest Sequences (bp)": "6792797", "N50 (bp)": "6792797", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.6", "Number of CDSs": "6069", "Average Protein Length": "333.2", "Coding Ratio (%)": "89.3", "Number of rRNAs": "16", "Number of tRNAs": "68", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas tolaasii", "strain": "strain=NCPPB 2192", "accession": "GCA_002813445.1", "taxid": 29442, "species_taxid": 29442, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2261, 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"organism_name": "Pseudomonas fluorescens", "strain": "strain=NBRC 14160", "accession": "GCA_002091595.1", "taxid": 294, "species_taxid": 294, "relation_to_type": "suspected-type", "validated": true, "ani": 88.2619, "matched_fragments": 1621, "total_fragments": 2264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 88.2599, "matched_fragments": 1670, "total_fragments": 2264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas azotoformans", "strain": "", "accession": "GCA_900624915.1", "taxid": 47878, "species_taxid": 47878, "relation_to_type": "suspected-type", "validated": true, "ani": 88.2385, "matched_fragments": 1671, "total_fragments": 2264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas canadensis", "strain": "strain=2-92", "accession": "GCA_000503215.1", "taxid": 915099, "species_taxid": 915099, "relation_to_type": "type", "validated": true, "ani": 88.1781, "matched_fragments": 1616, "total_fragments": 2264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas extremorientalis", "strain": "", "accession": "GCA_900625005.1", "taxid": 169669, "species_taxid": 169669, "relation_to_type": "type", "validated": true, "ani": 88.1708, "matched_fragments": 1631, "total_fragments": 2264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fluorescens", "strain": "strain=DSM 50090", "accession": "GCA_007858165.1", "taxid": 294, "species_taxid": 294, "relation_to_type": "suspected-type", "validated": true, "ani": 88.1315, "matched_fragments": 1663, "total_fragments": 2264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas marginalis", "strain": "strain=DSM 13124", "accession": "GCA_007858155.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", "validated": true, "ani": 88.1046, "matched_fragments": 1548, "total_fragments": 2264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas simiae", "strain": "strain=CCUG 50988", "accession": "GCA_001730615.1", "taxid": 321846, "species_taxid": 321846, "relation_to_type": "type", "validated": true, "ani": 88.0739, "matched_fragments": 1564, "total_fragments": 2264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas simiae", "strain": "strain=CCUG 50988", "accession": "GCA_900111895.1", "taxid": 321846, "species_taxid": 321846, "relation_to_type": "type", "validated": true, "ani": 88.0269, "matched_fragments": 1583, "total_fragments": 2264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas nabeulensis", "strain": "strain=E10B", "accession": "GCA_004682045.1", "taxid": 2293833, "species_taxid": 2293833, "relation_to_type": 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