{ "type": "genome", "identifier": "GCF_002813455.1", "organism": "Pseudomonas baetica", "title": "Pseudomonas baetica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002813455.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488362", "wgs_master": "PHHE00000000.1", "refseq_category": "reference genome", "taxid": "674054", "species_taxid": "674054", "organism_name": "Pseudomonas baetica", "infraspecific_name": "strain=LMG 25716", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/06", "asm_name": "ASM281345v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_002813455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/813/455/GCF_002813455.1_ASM281345v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6902809", "genome_size_ungapped": "6902809", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002813455.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "6249", "protein_coding_gene_count": "5958", "non_coding_gene_count": "96", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-06", "dateModified": "2017-12-06", "datePublished": "2017-12-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas baetica" ], "sample_taxid": [ "674054" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.927 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6902809", "Number of Sequences": "1", "Longest Sequences (bp)": "6902809", "N50 (bp)": "6902809", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.8", "Number of CDSs": "6294", "Average Protein Length": "320.8", "Coding Ratio (%)": "87.8", "Number of rRNAs": "19", "Number of tRNAs": "76", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas baetica", "strain": "strain=LMG 25716", "accession": "GCA_002813455.1", "taxid": 674054, "species_taxid": 674054, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2293, "total_fragments": 2300, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas baetica", "strain": "strain=a390", "accession": "GCA_003031005.1", "taxid": 674054, "species_taxid": 674054, "relation_to_type": "type", "validated": true, "ani": 99.9512, "matched_fragments": 2238, "total_fragments": 2300, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas tensinigenes", "strain": "strain=ZA 5.3", "accession": "GCA_014268445.2", "taxid": 2745511, "species_taxid": 2745511, "relation_to_type": "type", "validated": true, "ani": 89.4696, "matched_fragments": 1738, "total_fragments": 2300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": "GCA_019614655.1", "taxid": 2815720, "species_taxid": 2815720, "relation_to_type": "type", "validated": true, "ani": 89.4548, "matched_fragments": 1722, "total_fragments": 2300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas crudilactis", "strain": "strain=UCMA 17988", "accession": "GCA_013433315.1", "taxid": 2697028, "species_taxid": 2697028, "relation_to_type": "type", "validated": true, "ani": 89.2937, "matched_fragments": 1705, "total_fragments": 2300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas zeae", "strain": "strain=OE 48.2", "accession": "GCA_014268485.2", "taxid": 2745510, "species_taxid": 2745510, "relation_to_type": "type", "validated": true, "ani": 89.2586, "matched_fragments": 1731, "total_fragments": 2300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas koreensis", "strain": "strain=DSM 16610", "accession": "GCA_012986595.1", "taxid": 198620, "species_taxid": 198620, "relation_to_type": "suspected-type", "validated": true, "ani": 88.9769, "matched_fragments": 1683, "total_fragments": 2300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas koreensis", "strain": "strain=CCUG 51519", "accession": "GCA_008801535.1", "taxid": 198620, "species_taxid": 198620, "relation_to_type": "suspected-type", "validated": true, "ani": 88.9747, "matched_fragments": 1680, "total_fragments": 2300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 88.1714, "matched_fragments": 1657, "total_fragments": 2300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 87.9819, "matched_fragments": 1598, "total_fragments": 2300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hamedanensis", "strain": "strain=SWRI65", "accession": "GCA_014268595.2", "taxid": 2745504, "species_taxid": 2745504, "relation_to_type": "type", "validated": true, "ani": 87.7554, "matched_fragments": 1611, "total_fragments": 2300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": "strain=1008", "accession": "GCA_024112395.1", "taxid": 2853159, "species_taxid": 2853159, "relation_to_type": "type", "validated": true, "ani": 83.2284, "matched_fragments": 1284, "total_fragments": 2300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas fuscovaginae", "strain": "strain=LMG 2158", "accession": "GCA_900108595.1", "taxid": 50340, "species_taxid": 50340, "relation_to_type": "suspected-type", "validated": true, "ani": 82.3771, "matched_fragments": 1153, "total_fragments": 2300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas brassicae", "strain": "strain=MAFF 212427", "accession": "GCA_010671725.1", "taxid": 2708063, "species_taxid": 2708063, 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