{
    "type": "genome",
    "identifier": "GCF_002813775.1",
    "organism": "Candidatus Thiodictyon syntrophicum",
    "title": "Candidatus Thiodictyon syntrophicum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Geneva",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002813775.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04631812",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1166950",
        "species_taxid": "1166950",
        "organism_name": "Candidatus Thiodictyon syntrophicum",
        "infraspecific_name": "strain=Cad16T",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/12/07",
        "asm_name": "ASM281377v1",
        "asm_submitter": "University of Geneva",
        "gbrs_paired_asm": "GCA_002813775.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/813/775/GCF_002813775.1_ASM281377v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7738984",
        "genome_size_ungapped": "7738984",
        "gc_percent": "66.000000",
        "replicon_count": "3",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-05",
        "total_gene_count": "6701",
        "protein_coding_gene_count": "6513",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-12-07",
    "dateModified": "2017-12-07",
    "datePublished": "2017-12-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Thiodictyon syntrophicum"
        ],
        "sample_taxid": [
            "1166950"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Switzerland:Ticino"
        ],
        "sample_host_location_id": [],
        "data_size": "2.130 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.78,
        "strain_heterogeneity": 33.33,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7738984",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "6837296",
        "N50 (bp)": "6837296",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.2",
        "Number of CDSs": "6739",
        "Average Protein Length": "322.2",
        "Coding Ratio (%)": "84.2",
        "Number of rRNAs": "6",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Allochromatium tepidum",
                "strain": "strain=NZ",
                "accession": "GCA_018409545.1",
                "taxid": 553982,
                "species_taxid": 553982,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3813,
                "matched_fragments": 401,
                "total_fragments": 2578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Allochromatium humboldtianum",
                "strain": "strain=DSM 21881",
                "accession": "GCA_013385175.1",
                "taxid": 504901,
                "species_taxid": 504901,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1218,
                "matched_fragments": 422,
                "total_fragments": 2578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Allochromatium vinosum",
                "strain": "strain=DSM 180",
                "accession": "GCA_000025485.1",
                "taxid": 1049,
                "species_taxid": 1049,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1151,
                "matched_fragments": 400,
                "total_fragments": 2578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marichromatium gracile",
                "strain": "strain=DSM 203",
                "accession": "GCA_016583515.1",
                "taxid": 1048,
                "species_taxid": 1048,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.096,
                "matched_fragments": 440,
                "total_fragments": 2578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiocystis violacea",
                "strain": "strain=DSM 207",
                "accession": "GCA_016583575.1",
                "taxid": 13725,
                "species_taxid": 13725,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0838,
                "matched_fragments": 498,
                "total_fragments": 2578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marichromatium gracile",
                "strain": "strain=DSM 203",
                "accession": "GCA_004343155.1",
                "taxid": 1048,
                "species_taxid": 1048,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0746,
                "matched_fragments": 449,
                "total_fragments": 2578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiocystis violascens",
                "strain": "strain=DSM 198",
                "accession": "GCA_000227745.3",
                "taxid": 73141,
                "species_taxid": 73141,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9947,
                "matched_fragments": 433,
                "total_fragments": 2578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marichromatium purpuratum",
                "strain": "strain=984",
                "accession": "GCA_000224005.3",
                "taxid": 37487,
                "species_taxid": 37487,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8904,
                "matched_fragments": 456,
                "total_fragments": 2578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiocapsa roseopersicina",
                "strain": "strain=DSM 217",
                "accession": "GCA_900106925.1",
                "taxid": 1058,
                "species_taxid": 1058,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8333,
                "matched_fragments": 455,
                "total_fragments": 2578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiocapsa bogorovii",
                "strain": "strain=BBS",
                "accession": "GCA_021228795.1",
                "taxid": 521689,
                "species_taxid": 521689,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8221,
                "matched_fragments": 397,
                "total_fragments": 2578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiocapsa marina",
                "strain": "strain=5811",
                "accession": "GCA_000223985.2",
                "taxid": 244573,
                "species_taxid": 244573,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.809,
                "matched_fragments": 434,
                "total_fragments": 2578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiorhodococcus minor",
                "strain": "strain=DSM 11518",
                "accession": "GCA_010820565.1",
                "taxid": 57489,
                "species_taxid": 57489,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7653,
                "matched_fragments": 432,
                "total_fragments": 2578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marichromatium bheemlicum",
                "strain": "strain=DSM 18632",
                "accession": "GCA_012276755.1",
                "taxid": 365339,
                "species_taxid": 365339,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7644,
                "matched_fragments": 395,
                "total_fragments": 2578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiocapsa rosea",
                "strain": "strain=DSM 235",
                "accession": "GCA_003634315.1",
                "taxid": 69360,
                "species_taxid": 69360,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7435,
                "matched_fragments": 472,
                "total_fragments": 2578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiohalobacter thiocyanaticus",
                "strain": "strain=Hrh1",
                "accession": "GCA_003932505.1",
                "taxid": 585455,
                "species_taxid": 585455,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9421,
                "matched_fragments": 220,
                "total_fragments": 2578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aromaticivorans",
                "strain": "strain=MAP12",
                "accession": "GCA_019097855.1",
                "taxid": 2849492,
                "species_taxid": 2849492,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0171,
                "matched_fragments": 202,
                "total_fragments": 2578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas cavernae",
                "strain": "strain=K2W31S-8",
                "accession": "GCA_003595175.1",
                "taxid": 2320867,
                "species_taxid": 2320867,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9595,
                "matched_fragments": 180,
                "total_fragments": 2578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas lalucatii",
                "strain": "strain=R1b54",
                "accession": "GCA_018398425.1",
                "taxid": 1424203,
                "species_taxid": 1424203,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9406,
                "matched_fragments": 227,
                "total_fragments": 2578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aeruginosa",
                "strain": "strain=DSM 50071",
                "accession": "GCA_024169805.1",
                "taxid": 287,
                "species_taxid": 287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.818,
                "matched_fragments": 230,
                "total_fragments": 2578,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 2.78,
            "strain_heterogeneity": 33.33
        },
        "gtdb_result": [
            {
                "accession": "GCF_002813775.1",
                "gtdb_species": "s__Thiodictyon syntrophicum",
                "ani": 100.0,
                "matched_fragments": 2575,
                "total_fragments": 2578,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiodictyon",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_903828115.1",
                "gtdb_species": "s__Thiodictyon sp903828115",
                "ani": 92.9077,
                "matched_fragments": 1496,
                "total_fragments": 2578,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiodictyon",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016292295.1",
                "gtdb_species": "s__Thiodictyon sp016292295",
                "ani": 88.5937,
                "matched_fragments": 572,
                "total_fragments": 2578,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiodictyon",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903946935.1",
                "gtdb_species": "s__Thiodictyon sp903946935",
                "ani": 82.3142,
                "matched_fragments": 1116,
                "total_fragments": 2578,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiodictyon",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.89",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_903837595.1",
                "gtdb_species": "s__Thiodictyon sp903837595",
                "ani": 82.3036,
                "matched_fragments": 1130,
                "total_fragments": 2578,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiodictyon",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000379525.1",
                "gtdb_species": "s__Lamprocystis purpurea",
                "ani": 80.8074,
                "matched_fragments": 1072,
                "total_fragments": 2578,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Lamprocystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.73",
                "min_intra_species_ani": "99.73",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903933125.1",
                "gtdb_species": "s__Lamprocystis sp903933125",
                "ani": 80.6394,
                "matched_fragments": 968,
                "total_fragments": 2578,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Lamprocystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.80",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_013426805.1",
                "gtdb_species": "s__Lamprocystis sp013426805",
                "ani": 80.1437,
                "matched_fragments": 1033,
                "total_fragments": 2578,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Lamprocystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Candidatus",
        "Thiodictyon",
        "syntrophicum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}