{ "type": "genome", "identifier": "GCF_002831565.1", "organism": "Spirosoma pollinicola", "title": "Spirosoma pollinicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Justus-Liebig University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002831565.1", "bioproject": "PRJNA224116", "biosample": "SAMN08109548", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2057025", "species_taxid": "2057025", "organism_name": "Spirosoma pollinicola", "infraspecific_name": "strain=Ha7", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/11", "asm_name": "ASM283156v1", "asm_submitter": "Justus-Liebig University", "gbrs_paired_asm": "GCA_002831565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/831/565/GCF_002831565.1_ASM283156v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8794837", "genome_size_ungapped": "8794837", "gc_percent": "48.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002831565.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "7669", "protein_coding_gene_count": "7491", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-11", "dateModified": "2017-12-11", "datePublished": "2017-12-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirosoma pollinicola" ], "sample_taxid": [ "2057025" ], "sample_host_organism": [ "Corylus avellana" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "2.507 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8794837", "Number of Sequences": "1", "Longest Sequences (bp)": "8794837", "N50 (bp)": "8794837", "Gap Ratio (%)": "0.000307", "GCcontent (%)": "47.8", "Number of CDSs": "7458", "Average Protein Length": "333.7", "Coding Ratio (%)": "84.9", "Number of rRNAs": "1", "Number of tRNAs": "41", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spirosoma pollinicola", "strain": "strain=Ha7", "accession": "GCA_002831565.1", "taxid": 2057025, "species_taxid": 2057025, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2931, "total_fragments": 2931, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Spirosoma radiotolerans", "strain": "strain=DG5A", "accession": "GCA_000974425.1", "taxid": 1379870, "species_taxid": 1379870, "relation_to_type": "type", "validated": true, "ani": 79.603, "matched_fragments": 1068, "total_fragments": 2931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma fluviale", "strain": "strain=DSM 29961", "accession": "GCA_900230225.1", "taxid": 1597977, "species_taxid": 1597977, "relation_to_type": "type", "validated": true, "ani": 79.475, "matched_fragments": 1088, "total_fragments": 2931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma endophyticum", "strain": "strain=DSM 26130", "accession": "GCA_900112365.1", "taxid": 662367, "species_taxid": 662367, "relation_to_type": "type", "validated": true, "ani": 79.095, "matched_fragments": 846, "total_fragments": 2931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma luteum", "strain": "strain=DSM 19990", "accession": "GCA_000374065.1", "taxid": 431553, "species_taxid": 431553, "relation_to_type": "type", "validated": true, "ani": 78.771, "matched_fragments": 604, "total_fragments": 2931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma utsteinense", "strain": "strain=LMG 31447", "accession": "GCA_014282275.1", "taxid": 2585773, "species_taxid": 2585773, "relation_to_type": "type", "validated": true, "ani": 78.125, "matched_fragments": 573, "total_fragments": 2931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma arboris", "strain": "strain=HMF4905", "accession": "GCA_009754945.1", "taxid": 2682092, "species_taxid": 2682092, "relation_to_type": "type", "validated": true, "ani": 77.9698, "matched_fragments": 802, "total_fragments": 2931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma endbachense", "strain": "strain=I-24", "accession": "GCA_010233585.1", "taxid": 2666025, "species_taxid": 2666025, "relation_to_type": "type", "validated": true, "ani": 77.7878, "matched_fragments": 607, "total_fragments": 2931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma validum", "strain": "strain=BT704", "accession": "GCA_014699035.1", "taxid": 2771355, "species_taxid": 2771355, "relation_to_type": "type", "validated": true, "ani": 77.6693, "matched_fragments": 590, "total_fragments": 2931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma aureum", "strain": "strain=BT328", "accession": "GCA_011604685.1", "taxid": 2692134, "species_taxid": 2692134, "relation_to_type": "type", "validated": true, "ani": 77.6497, "matched_fragments": 566, "total_fragments": 2931, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma montaniterrae", "strain": "strain=DY10", "accession": "GCA_001988955.1", "taxid": 1178516, "species_taxid": 1178516, 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"gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900230225.1", "gtdb_species": "s__Spirosoma fluviale", "ani": 79.4701, "matched_fragments": 1089, "total_fragments": 2931, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900112365.1", "gtdb_species": "s__Spirosoma endophyticum", "ani": 79.1142, "matched_fragments": 843, "total_fragments": 2931, "gtdb_taxonomy": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Spirosoma", "pollinicola" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }