{ "type": "genome", "identifier": "GCF_002834295.1", "organism": "Rhodohalobacter barkolensis", "title": "Rhodohalobacter barkolensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "ZheJiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002834295.1", "bioproject": "PRJNA224116", "biosample": "SAMN08098102", "wgs_master": "PISP00000000.1", "refseq_category": "reference genome", "taxid": "2053187", "species_taxid": "2053187", "organism_name": "Rhodohalobacter barkolensis", "infraspecific_name": "strain=15182", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/12", "asm_name": "ASM283429v1", "asm_submitter": "ZheJiang University", "gbrs_paired_asm": "GCA_002834295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/834/295/GCF_002834295.1_ASM283429v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3597295", "genome_size_ungapped": "3597295", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002834295.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3056", "protein_coding_gene_count": "3006", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-12", "dateModified": "2017-12-12", "datePublished": "2017-12-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodohalobacter barkolensis" ], "sample_taxid": [ "2053187" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xinjiang" ], "sample_host_location_id": [], "data_size": "1.022 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3597295", "Number of Sequences": "7", "Longest Sequences (bp)": "1807017", "N50 (bp)": "1807017", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.5", "Number of CDSs": "3016", "Average Protein Length": "346.9", "Coding Ratio (%)": "87.2", "Number of rRNAs": "4", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodohalobacter barkolensis", "strain": "strain=15182", "accession": "GCA_002834295.1", "taxid": 2053187, "species_taxid": 2053187, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1196, "total_fragments": 1196, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rhodohalobacter halophilus", "strain": "strain=JZ3C29", "accession": "GCA_001715195.1", "taxid": 1812810, "species_taxid": 1812810, "relation_to_type": "type", "validated": true, "ani": 79.2391, "matched_fragments": 437, "total_fragments": 1196, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodohalobacter mucosus", "strain": "strain=8A47", "accession": "GCA_003150675.1", "taxid": 2079485, "species_taxid": 2079485, "relation_to_type": "type", "validated": true, "ani": 76.6875, "matched_fragments": 103, "total_fragments": 1196, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002834295.1", "gtdb_species": "s__Rhodohalobacter barkolensis", "ani": 100.0, "matched_fragments": 1196, "total_fragments": 1196, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Rhodohalobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_001564065.1", "gtdb_species": "s__Rhodohalobacter sp001564065", "ani": 80.0853, "matched_fragments": 504, "total_fragments": 1196, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Rhodohalobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001715195.1", "gtdb_species": "s__Rhodohalobacter halophilus", "ani": 79.2391, "matched_fragments": 437, "total_fragments": 1196, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__Rhodohalobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007118525.1", "gtdb_species": "s__QGGB01 sp007118525", "ani": 76.9775, "matched_fragments": 72, "total_fragments": 1196, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__QGGB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007693295.1", "gtdb_species": "s__QGGB01 sp007693295", "ani": 76.5902, "matched_fragments": 120, "total_fragments": 1196, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__QGGB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009909035.1", "gtdb_species": "s__SW132 sp009909035", "ani": 76.581, "matched_fragments": 65, "total_fragments": 1196, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__SW132", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003390325.1", "gtdb_species": "s__SW132 sp003390325", "ani": 76.5356, "matched_fragments": 110, "total_fragments": 1196, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__SW132", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003561515.1", "gtdb_species": "s__QGGB01 sp003561515", "ani": 76.5037, "matched_fragments": 71, "total_fragments": 1196, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__QGGB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.73", "min_intra_species_ani": "99.61", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_002359315.1", "gtdb_species": "s__UBA2664 sp002359315", "ani": 76.39, "matched_fragments": 57, "total_fragments": 1196, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__UBA2664", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007135335.1", "gtdb_species": "s__UBA2664 sp007135335", "ani": 76.1936, "matched_fragments": 87, "total_fragments": 1196, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__UBA2664", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.26", "min_intra_species_ani": "99.26", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_007123985.1", "gtdb_species": "s__UBA2664 sp007123985", "ani": 75.8857, "matched_fragments": 80, "total_fragments": 1196, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__UBA2664", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.06", "min_intra_species_ani": "99.06", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003555185.1", "gtdb_species": "s__SW132 sp003555185", "ani": 75.6595, "matched_fragments": 61, "total_fragments": 1196, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Balneolales;f__Balneolaceae;g__SW132", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": 3118949.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Rhodohalobacter", "barkolensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }