{ "type": "genome", "identifier": "GCF_002835505.1", "organism": "Enterovibrio nigricans", "title": "Enterovibrio nigricans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CIAD, A.C.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002835505.1", "bioproject": "PRJNA224116", "biosample": "SAMN04311938", "wgs_master": "PIYP00000000.1", "refseq_category": "na", "taxid": "504469", "species_taxid": "504469", "organism_name": "Enterovibrio nigricans", "infraspecific_name": "strain=CAIM 661", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/12", "asm_name": "ASM283550v1", "asm_submitter": "CIAD, A.C.", "gbrs_paired_asm": "GCA_002835505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/835/505/GCF_002835505.1_ASM283550v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5007968", "genome_size_ungapped": "5007968", "gc_percent": "46.500000", "replicon_count": "0", "scaffold_count": "394", "contig_count": "394", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-19", "total_gene_count": "5397", "protein_coding_gene_count": "4105", "non_coding_gene_count": "98", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-12", "dateModified": "2017-12-12", "datePublished": "2017-12-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterovibrio nigricans" ], "sample_taxid": [ "504469" ], "sample_host_organism": [ "Sparus aurata" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Les Cases d Alcanar, Catalonia" ], "sample_host_location_id": [], "data_size": "1.442 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5007968", "Number of Sequences": "394", "Longest Sequences (bp)": "191969", "N50 (bp)": "34102", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.6", "Number of CDSs": "5714", "Average Protein Length": "236.1", "Coding Ratio (%)": "80.8", "Number of rRNAs": "8", "Number of tRNAs": "78", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterovibrio nigricans", "strain": "strain=DSM 22720", "accession": "GCA_900167155.1", "taxid": 504469, "species_taxid": 504469, "relation_to_type": "type", "validated": true, "ani": 99.9315, "matched_fragments": 1484, "total_fragments": 1488, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Grimontia sedimenti", "strain": "strain=S25", "accession": "GCA_011045095.1", "taxid": 2711294, "species_taxid": 2711294, "relation_to_type": "type", "validated": true, "ani": 80.4496, "matched_fragments": 536, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia celer", "strain": "strain=CECT 9029", "accession": "GCA_900055185.1", "taxid": 1796497, "species_taxid": 1796497, "relation_to_type": "type", "validated": true, "ani": 80.4452, "matched_fragments": 552, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia indica", "strain": "strain=AK16", "accession": "GCA_000333895.2", "taxid": 1056512, "species_taxid": 1056512, "relation_to_type": "type", "validated": true, "ani": 80.3724, "matched_fragments": 566, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia marina", "strain": "strain=CECT 8713", "accession": "GCA_900060185.1", "taxid": 646534, "species_taxid": 646534, "relation_to_type": "type", "validated": true, "ani": 80.3263, "matched_fragments": 546, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterovibrio baiacu", "strain": "strain=A649", "accession": "GCA_004120195.1", "taxid": 2491023, "species_taxid": 2491023, "relation_to_type": "type", "validated": true, "ani": 80.3086, "matched_fragments": 532, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterovibrio baiacu", "strain": "strain=A649", "accession": "GCA_014863865.1", "taxid": 2491023, "species_taxid": 2491023, "relation_to_type": "type", "validated": true, "ani": 80.3048, "matched_fragments": 531, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterovibrio calviensis", "strain": "strain=DSM 14347", "accession": "GCA_000621165.1", "taxid": 91359, "species_taxid": 91359, "relation_to_type": "type", "validated": true, "ani": 80.2047, "matched_fragments": 555, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterovibrio norvegicus", "strain": "strain=DSM 15893", "accession": "GCA_900115495.1", "taxid": 188144, "species_taxid": 188144, "relation_to_type": "type", "validated": true, "ani": 80.0688, "matched_fragments": 512, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia hollisae", "strain": "strain=CIP 101886", "accession": "GCA_000176515.1", "taxid": 673, "species_taxid": 673, "relation_to_type": "type", "validated": true, "ani": 79.7721, "matched_fragments": 460, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio stylophorae", "strain": "strain=CECT 7929", "accession": "GCA_921293875.1", "taxid": 659351, "species_taxid": 659351, "relation_to_type": "type", "validated": true, "ani": 78.2675, "matched_fragments": 123, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio natriegens", "strain": "strain=14048", "accession": "GCA_024508015.1", "taxid": 691, "species_taxid": 691, "relation_to_type": "type", "validated": true, "ani": 78.1479, "matched_fragments": 143, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio variabilis", "strain": "strain=CAIM 1454", "accession": "GCA_003263785.1", "taxid": 990271, "species_taxid": 990271, "relation_to_type": "type", "validated": true, "ani": 78.0674, "matched_fragments": 136, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium galatheae", "strain": "strain=DSM 100496", "accession": "GCA_023653475.1", "taxid": 1654360, "species_taxid": 1654360, "relation_to_type": "type", "validated": true, "ani": 77.9965, "matched_fragments": 138, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio porteresiae", "strain": "strain=MSSRF30", "accession": "GCA_024347055.1", "taxid": 435912, "species_taxid": 435912, "relation_to_type": "type", "validated": true, "ani": 77.9306, "matched_fragments": 113, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio coralliirubri", "strain": "strain=DSM 27495", "accession": "GCA_024347375.1", "taxid": 1516159, "species_taxid": 1516159, "relation_to_type": "type", "validated": true, "ani": 77.9044, "matched_fragments": 135, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio artabrorum", "strain": "strain=CECT 7226", "accession": "GCA_024347295.1", "taxid": 446374, "species_taxid": 446374, "relation_to_type": "type", "validated": true, "ani": 77.8893, "matched_fragments": 125, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium sanguinicancri", "strain": "strain=CECT 7579", "accession": "GCA_024346675.1", "taxid": 875932, "species_taxid": 875932, "relation_to_type": "type", "validated": true, "ani": 77.8731, "matched_fragments": 187, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio celticus", "strain": "strain=CECT 7224", "accession": "GCA_024347335.1", "taxid": 446372, "species_taxid": 446372, "relation_to_type": "type", "validated": true, "ani": 77.7612, "matched_fragments": 136, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio rhizosphaerae", "strain": "strain=LMG 23790", "accession": "GCA_024347095.1", "taxid": 398736, "species_taxid": 398736, "relation_to_type": "type", "validated": true, "ani": 77.4996, "matched_fragments": 74, "total_fragments": 1488, "ani_threshold": 95, "status": "below_threshold" } ], 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"N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011045095.1", "gtdb_species": "s__Enterovibrio sedimenti", "ani": 80.4836, "matched_fragments": 533, "total_fragments": 1488, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Enterovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900055185.1", "gtdb_species": "s__Enterovibrio celer", "ani": 80.442, "matched_fragments": 553, "total_fragments": 1488, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Enterovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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