{ "type": "genome", "identifier": "GCF_002836395.1", "organism": "Nocardioides alpinus", "title": "Nocardioides alpinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Alaska Fairbanks", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002836395.1", "bioproject": "PRJNA224116", "biosample": "SAMN08125759", "wgs_master": "PJBV00000000.1", "refseq_category": "na", "taxid": "748909", "species_taxid": "748909", "organism_name": "Nocardioides alpinus", "infraspecific_name": "strain=DSM 23325", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/12", "asm_name": "ASM283639v1", "asm_submitter": "University of Alaska Fairbanks", "gbrs_paired_asm": "GCA_002836395.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/836/395/GCF_002836395.1_ASM283639v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4598243", "genome_size_ungapped": "4598243", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "35", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-19", "total_gene_count": "4379", "protein_coding_gene_count": "4309", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-12", "dateModified": "2017-12-12", "datePublished": "2017-12-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides alpinus" ], "sample_taxid": [ "748909" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Austria: Pitztaler Jochl glacier in the Otztaler Alps in Tyrol" ], "sample_host_location_id": [], "data_size": "1.225 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4598243", "Number of Sequences": "35", "Longest Sequences (bp)": "1104683", "N50 (bp)": "344447", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.9", "Number of CDSs": "4346", "Average Protein Length": "327.4", "Coding Ratio (%)": "92.8", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides alpinus", "strain": "strain=DSM 23325", "accession": "GCA_002836395.1", "taxid": 748909, "species_taxid": 748909, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 86.3564, "matched_fragments": 1008, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides glacieisoli", "strain": "strain=HLT3-15", "accession": "GCA_004137245.1", "taxid": 1168730, "species_taxid": 1168730, "relation_to_type": "type", "validated": true, "ani": 86.1449, "matched_fragments": 1069, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides baculatus", "strain": "strain=G10", "accession": "GCA_016735675.1", "taxid": 2801337, "species_taxid": 2801337, "relation_to_type": "type", "validated": true, "ani": 86.0054, "matched_fragments": 1070, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ganghwensis", "strain": "strain=9920", "accession": "GCA_014779655.1", "taxid": 252230, "species_taxid": 252230, "relation_to_type": "type", "validated": true, "ani": 85.8551, "matched_fragments": 1043, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides astragali", "strain": "strain=CGMCC 4.7327", "accession": "GCA_024436375.1", "taxid": 1776736, "species_taxid": 1776736, "relation_to_type": "type", "validated": true, "ani": 85.791, "matched_fragments": 1035, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides cavernae", "strain": "strain=KCTC 39551", "accession": "GCA_014779675.1", "taxid": 1921566, "species_taxid": 1921566, "relation_to_type": "type", "validated": true, "ani": 85.6772, "matched_fragments": 1047, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides cavernae", 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{ "accession": "GCF_004137345.1", "gtdb_species": "s__Nocardioides sp004137345", "ani": 86.8436, "matched_fragments": 1093, "total_fragments": 1518, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017310035.1", "gtdb_species": "s__Nocardioides sp017310035", "ani": 86.1891, "matched_fragments": 1038, "total_fragments": 1518, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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