{ "type": "genome", "identifier": "GCF_002838765.1", "organism": "Kangiella profundi", "title": "Kangiella profundi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Jiao Tong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002838765.1", "bioproject": "PRJNA224116", "biosample": "SAMN08132699", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1561924", "species_taxid": "1561924", "organism_name": "Kangiella profundi", "infraspecific_name": "strain=FT102", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/13", "asm_name": "ASM283876v1", "asm_submitter": "Shanghai Jiao Tong University", "gbrs_paired_asm": "GCA_002838765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/838/765/GCF_002838765.1_ASM283876v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2653010", "genome_size_ungapped": "2653010", "gc_percent": "44.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002838765.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "2482", "protein_coding_gene_count": "2415", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-13", "dateModified": "2017-12-13", "datePublished": "2017-12-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Kangiella profundi" ], "sample_taxid": [ "1561924" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean" ], "sample_host_location_id": [], "data_size": "0.757 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2653010", "Number of Sequences": "1", "Longest Sequences (bp)": "2653010", "N50 (bp)": "2653010", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.8", "Number of CDSs": "2438", "Average Protein Length": "325.3", "Coding Ratio (%)": "89.7", "Number of rRNAs": "6", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kangiella profundi", "strain": "strain=FT102", "accession": "GCA_002838765.1", "taxid": 1561924, "species_taxid": 1561924, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 884, "total_fragments": 884, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kangiella profundi", "strain": "strain=CGMCC 1.12959", "accession": "GCA_014640235.1", "taxid": 1561924, "species_taxid": 1561924, "relation_to_type": "type", "validated": true, "ani": 99.9962, "matched_fragments": 882, "total_fragments": 884, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kangiella aquimarina", "strain": "strain=DSM 16071", "accession": "GCA_000374105.1", "taxid": 261965, "species_taxid": 261965, "relation_to_type": "type", "validated": true, "ani": 88.9076, "matched_fragments": 788, "total_fragments": 884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kangiella koreensis", "strain": "strain=DSM 16069", "accession": "GCA_000024085.1", "taxid": 261964, "species_taxid": 261964, "relation_to_type": "type", "validated": true, "ani": 81.7983, "matched_fragments": 604, "total_fragments": 884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kangiella geojedonensis", 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78.6271, "matched_fragments": 146, "total_fragments": 884, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Kangiellaceae;g__Kangiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.32", "min_intra_species_ani": "96.32", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000981765.1", "gtdb_species": "s__Kangiella geojedonensis", "ani": 78.3495, "matched_fragments": 143, "total_fragments": 884, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Kangiellaceae;g__Kangiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013373015.1", "gtdb_species": "s__Kangiella sp013373015", "ani": 77.2567, "matched_fragments": 142, 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