{
    "type": "genome",
    "identifier": "GCF_002843305.1",
    "organism": "Streptomyces barkulensis",
    "title": "Streptomyces barkulensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Tarim University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002843305.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08005599",
        "wgs_master": "PGSG00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1257026",
        "species_taxid": "1257026",
        "organism_name": "Streptomyces barkulensis",
        "infraspecific_name": "strain=RC 1831",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/12/15",
        "asm_name": "ASM284330v1",
        "asm_submitter": "Tarim University",
        "gbrs_paired_asm": "GCA_002843305.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/843/305/GCF_002843305.1_ASM284330v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6544873",
        "genome_size_ungapped": "6544247",
        "gc_percent": "73.000000",
        "replicon_count": "0",
        "scaffold_count": "119",
        "contig_count": "119",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002843305.1-RS_2024_08_06",
        "annotation_date": "2024-08-06",
        "total_gene_count": "5969",
        "protein_coding_gene_count": "5747",
        "non_coding_gene_count": "79",
        "pubmed_id": "24436069"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-12-15",
    "dateModified": "2017-12-15",
    "datePublished": "2017-12-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces barkulensis"
        ],
        "sample_taxid": [
            "1257026"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.746 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 1.04,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6544873",
        "Number of Sequences": "119",
        "Longest Sequences (bp)": "361797",
        "N50 (bp)": "127012",
        "Gap Ratio (%)": "0.009565",
        "GCcontent (%)": "72.9",
        "Number of CDSs": "5968",
        "Average Protein Length": "314.0",
        "Coding Ratio (%)": "85.9",
        "Number of rRNAs": "11",
        "Number of tRNAs": "81",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptomyces barkulensis",
                "strain": "strain=RC 1831",
                "accession": "GCA_002843305.1",
                "taxid": 1257026,
                "species_taxid": 1257026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2114,
                "total_fragments": 2121,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Streptomyces barkulensis",
                "strain": "strain=RC 1831",
                "accession": "GCA_002811705.2",
                "taxid": 1257026,
                "species_taxid": 1257026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.8842,
                "matched_fragments": 2044,
                "total_fragments": 2121,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Streptomyces pini",
                "strain": "strain=PL19",
                "accession": "GCA_900114215.1",
                "taxid": 1520580,
                "species_taxid": 1520580,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.7266,
                "matched_fragments": 1836,
                "total_fragments": 2121,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Streptomyces verrucosisporus",
                "strain": "strain=CPB1-1",
                "accession": "GCA_017114865.1",
                "taxid": 1695161,
                "species_taxid": 1695161,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.0292,
                "matched_fragments": 1672,
                "total_fragments": 2121,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Streptomyces radiopugnans",
                "strain": "strain=CGMCC 4.3519",
                "accession": "GCA_900110735.1",
                "taxid": 403935,
                "species_taxid": 403935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.95,
                "matched_fragments": 1677,
                "total_fragments": 2121,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces taklimakanensis",
                "strain": "strain=TRM43335",
                "accession": "GCA_009709575.1",
                "taxid": 2569853,
                "species_taxid": 2569853,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.474,
                "matched_fragments": 1474,
                "total_fragments": 2121,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces megasporus",
                "strain": "strain=NRRL B-16372",
                "accession": "GCA_000718985.1",
                "taxid": 44060,
                "species_taxid": 44060,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.3257,
                "matched_fragments": 1405,
                "total_fragments": 2121,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces carminius",
                "strain": "strain=TRM SA0054",
                "accession": "GCA_002794255.1",
                "taxid": 2665496,
                "species_taxid": 2665496,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.9433,
                "matched_fragments": 1443,
                "total_fragments": 2121,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces griseocarneus",
                "strain": "strain=JCM 4580",
                "accession": "GCA_014655595.1",
                "taxid": 51201,
                "species_taxid": 51201,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3383,
                "matched_fragments": 1038,
                "total_fragments": 2121,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces gobiensis",
                "strain": "strain=1_25",
                "accession": "GCA_021216675.1",
                "taxid": 2875706,
                "species_taxid": 2875706,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.272,
                "matched_fragments": 976,
                "total_fragments": 2121,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces thermodiastaticus",
                "strain": "strain=DSM 40573",
                "accession": "GCA_021394575.1",
                "taxid": 44061,
                "species_taxid": 44061,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1597,
                "matched_fragments": 1025,
                "total_fragments": 2121,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces rimosus subsp. rimosus",
                "strain": "strain=R7",
                "accession": "GCA_022760195.1",
                "taxid": 132474,
                "species_taxid": 1927,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9412,
                "matched_fragments": 1144,
                "total_fragments": 2121,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces rapamycinicus",
                "strain": "strain=NRRL 5491",
                "accession": "GCA_024298965.1",
                "taxid": 1226757,
                "species_taxid": 1226757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4963,
                "matched_fragments": 1197,
                "total_fragments": 2121,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces cacaoi",
                "strain": "strain=NRRL B-1220",
                "accession": "GCA_002154495.1",
                "taxid": 1898,
                "species_taxid": 1898,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4413,
                "matched_fragments": 972,
                "total_fragments": 2121,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces ferrugineus",
                "strain": "strain=CCTCC AA2014009",
                "accession": "GCA_015160855.1",
                "taxid": 1413221,
                "species_taxid": 1413221,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3855,
                "matched_fragments": 1141,
                "total_fragments": 2121,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 1.04,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002843305.1",
                "gtdb_species": "s__Streptomyces barkulensis",
                "ani": 100.0,
                "matched_fragments": 2114,
                "total_fragments": 2121,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 96.765,
                "mean_intra_species_ani": "99.92",
                "min_intra_species_ani": "99.92",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900114215.1",
                "gtdb_species": "s__Streptomyces pini",
                "ani": 96.7246,
                "matched_fragments": 1836,
                "total_fragments": 2121,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 96.765,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017114865.1",
                "gtdb_species": "s__Streptomyces verrucosisporus",
                "ani": 95.0169,
                "matched_fragments": 1673,
                "total_fragments": 2121,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.1585,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900110735.1",
                "gtdb_species": "s__Streptomyces radiopugnans",
                "ani": 93.9389,
                "matched_fragments": 1678,
                "total_fragments": 2121,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009709575.1",
                "gtdb_species": "s__Streptomyces taklimakanensis",
                "ani": 87.5128,
                "matched_fragments": 1470,
                "total_fragments": 2121,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000718985.1",
                "gtdb_species": "s__Streptomyces megasporus",
                "ani": 87.3286,
                "matched_fragments": 1404,
                "total_fragments": 2121,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002794255.1",
                "gtdb_species": "s__Streptomyces carminius",
                "ani": 86.9351,
                "matched_fragments": 1443,
                "total_fragments": 2121,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013302895.1",
                "gtdb_species": "s__Streptomyces chlorinus",
                "ani": 81.1255,
                "matched_fragments": 1070,
                "total_fragments": 2121,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013450295.1",
                "gtdb_species": "s__Streptomyces sp013450295",
                "ani": 80.4421,
                "matched_fragments": 946,
                "total_fragments": 2121,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006539165.1",
                "gtdb_species": "s__Streptomyces cacaoi",
                "ani": 80.3837,
                "matched_fragments": 1087,
                "total_fragments": 2121,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.44",
                "min_intra_species_ani": "99.09",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_015160855.1",
                "gtdb_species": "s__Streptomyces ferrugineus",
                "ani": 80.3813,
                "matched_fragments": 1140,
                "total_fragments": 2121,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.201,
        "cell_length": -0.05,
        "doubling_h": 0.103,
        "growth_tmp": 28.0,
        "optimum_tmp": 29.036,
        "optimum_ph": 7.341,
        "genome_size": 8292419.302,
        "gc_content": 71.543,
        "coding_genes": 7141.289,
        "rRNA16S_genes": 6.155,
        "tRNA_genes": 67.804,
        "gram_stain": 0.998,
        "sporulation": 0.958,
        "motility": 0.049,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.005,
        "aerobic_respiration": 0.994,
        "mesophilic_range_tmp": 0.98,
        "thermophilic_range_tmp": 0.019,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.208,
        "coccus_cell_shape": 0.032,
        "filament_cell_shape": 0.582,
        "coccobacillus_cell_shape": 0.098,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.076
    },
    "_genome_taxon": [
        "Streptomyces",
        "barkulensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}