{ "type": "genome", "identifier": "GCF_002843355.2", "organism": "Colwellia echini", "title": "Colwellia echini", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Copenhagen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002843355.2", "bioproject": "PRJNA224116", "biosample": "SAMN08114792", "wgs_master": "PJAI00000000.2", "refseq_category": "reference genome", "taxid": "1982103", "species_taxid": "1982103", "organism_name": "Colwellia echini", "infraspecific_name": "strain=A3", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/28", "asm_name": "ASM284335v2", "asm_submitter": "University of Copenhagen", "gbrs_paired_asm": "GCA_002843355.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/843/355/GCF_002843355.2_ASM284335v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4267715", "genome_size_ungapped": "4267121", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "146", "contig_count": "146", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002843355.2-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3526", "protein_coding_gene_count": "3411", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-28", "dateModified": "2019-08-28", "datePublished": "2019-08-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Colwellia echini" ], "sample_taxid": [ "1982103" ], "sample_host_organism": [ "Strongylocentrotus droebachiensis (sea urchin)" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark: sea North of Zealand" ], "sample_host_location_id": [], "data_size": "1.202 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4267715", "Number of Sequences": "146", "Longest Sequences (bp)": "664069", "N50 (bp)": "181540", "Gap Ratio (%)": "0.013918", "GCcontent (%)": "36.8", "Number of CDSs": "3427", "Average Protein Length": "347.5", "Coding Ratio (%)": "83.7", "Number of rRNAs": "4", "Number of tRNAs": "77", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Colwellia echini", "strain": "strain=A3", "accession": "GCA_002843355.2", "taxid": 1982103, "species_taxid": 1982103, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1368, "total_fragments": 1371, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Colwellia demingiae", "strain": "strain=ACAM 459", "accession": "GCA_007954275.1", "taxid": 89401, "species_taxid": 89401, "relation_to_type": "type", "validated": true, "ani": 79.9128, "matched_fragments": 553, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia ponticola", "strain": "strain=OISW-25", "accession": "GCA_005885605.1", "taxid": 2304625, "species_taxid": 2304625, "relation_to_type": "type", "validated": true, "ani": 79.7259, "matched_fragments": 482, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia piezophila", "strain": "strain=ATCC BAA-637", "accession": "GCA_000378625.1", "taxid": 211668, "species_taxid": 211668, "relation_to_type": "type", "validated": true, "ani": 79.5065, "matched_fragments": 487, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia marinimaniae", "strain": "strain=MTCD1", "accession": "GCA_002207865.1", "taxid": 1513592, "species_taxid": 1513592, "relation_to_type": "type", "validated": true, "ani": 79.0851, "matched_fragments": 478, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litorilituus sediminis", "strain": "strain=JCM 17549", "accession": "GCA_004295665.1", "taxid": 718192, "species_taxid": 718192, "relation_to_type": "type", "validated": true, "ani": 78.4741, "matched_fragments": 299, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cognaticolwellia mytili", "strain": "strain=KCTC 52417", "accession": "GCA_002104475.1", "taxid": 1888913, "species_taxid": 1888913, "relation_to_type": "type", "validated": true, "ani": 78.357, "matched_fragments": 215, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 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215, "total_fragments": 1371, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Cognaticolwellia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016765535.1", "gtdb_species": "s__GCA-2401725 sp016765535", "ani": 77.5841, "matched_fragments": 199, "total_fragments": 1371, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__GCA-2401725", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.305, "cell_length": 0.2, "doubling_h": 0.613, "growth_tmp": 15.878, "optimum_tmp": 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