{ "type": "genome", "identifier": "GCF_002844375.1", "organism": "Thalassospira marina", "title": "Thalassospira marina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography,State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002844375.1", "bioproject": "PRJNA224116", "biosample": "SAMN07821581", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2048283", "species_taxid": "2048283", "organism_name": "Thalassospira marina", "infraspecific_name": "strain=CSC3H3", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/18", "asm_name": "ASM284437v1", "asm_submitter": "Third Institute of Oceanography,State Oceanic Administration", "gbrs_paired_asm": "GCA_002844375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/844/375/GCF_002844375.1_ASM284437v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5438289", "genome_size_ungapped": "5438289", "gc_percent": "54.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002844375.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "4760", "protein_coding_gene_count": "4656", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-18", "dateModified": "2017-12-18", "datePublished": "2017-12-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Thalassospira marina" ], "sample_taxid": [ "2048283" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: the China South Sea" ], "sample_host_location_id": [], "data_size": "1.517 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5438289", "Number of Sequences": "2", "Longest Sequences (bp)": "4530245", "N50 (bp)": "4530245", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.6", "Number of CDSs": "4745", "Average Protein Length": "332.0", "Coding Ratio (%)": "86.9", "Number of rRNAs": "19", "Number of tRNAs": "71", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thalassospira marina", "strain": "strain=CSC3H3", "accession": "GCA_002844375.1", "taxid": 2048283, "species_taxid": 2048283, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1810, "total_fragments": 1812, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thalassospira mesophila", "strain": "strain=JCM 18969", "accession": "GCA_002115755.1", "taxid": 1293891, "species_taxid": 1293891, "relation_to_type": "type", "validated": true, "ani": 83.4095, "matched_fragments": 1260, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassospira xiamenensis", "strain": "strain=M-5", "accession": "GCA_000300235.2", "taxid": 220697, "species_taxid": 220697, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6776, "matched_fragments": 707, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassospira xiamenensis", "strain": "strain=DSM 17429", "accession": "GCA_900156715.1", "taxid": 220697, "species_taxid": 220697, "relation_to_type": "suspected-type", "validated": true, "ani": 79.5208, "matched_fragments": 697, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassospira indica", "strain": "strain=PB8BT", "accession": "GCA_003403095.1", "taxid": 1891279, "species_taxid": 1891279, "relation_to_type": "type", "validated": true, "ani": 79.348, "matched_fragments": 652, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassospira povalilytica", "strain": "strain=Zumi 95", "accession": "GCA_002844235.1", "taxid": 732237, "species_taxid": 732237, "relation_to_type": "type", "validated": true, "ani": 79.2966, "matched_fragments": 675, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassospira profundimaris", "strain": "strain=WP0211", "accession": "GCA_000300275.1", "taxid": 502049, "species_taxid": 502049, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1224, "matched_fragments": 631, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassospira tepidiphila", "strain": "strain=DSM 18888", "accession": "GCA_011927685.1", "taxid": 393657, "species_taxid": 393657, "relation_to_type": "type", "validated": true, "ani": 79.0044, "matched_fragments": 652, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassospira alkalitolerans", "strain": "strain=JCM 18968", "accession": "GCA_002115745.1", "taxid": 1293890, "species_taxid": 1293890, "relation_to_type": "type", "validated": true, "ani": 78.9187, "matched_fragments": 654, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassospira tepidiphila", "strain": "strain=MCCC 1A03514", "accession": "GCA_001662875.1", "taxid": 393657, "species_taxid": 393657, "relation_to_type": "type", "validated": true, "ani": 78.9128, "matched_fragments": 652, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassospira australica", "strain": "strain=NP 3b2", "accession": "GCA_000763295.1", "taxid": 1528106, "species_taxid": 1528106, "relation_to_type": "type", "validated": true, "ani": 78.8953, "matched_fragments": 586, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassospira lucentensis", "strain": "strain=MCCC 1A00383", "accession": "GCA_003326595.1", "taxid": 168935, "species_taxid": 168935, "relation_to_type": "type", "validated": true, "ani": 78.5992, "matched_fragments": 590, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassospira lucentensis", "strain": "strain=DSM 14000", "accession": "GCA_000421265.1", "taxid": 168935, "species_taxid": 168935, "relation_to_type": "type", "validated": true, "ani": 78.5828, "matched_fragments": 604, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Donghicola tyrosinivorans", "strain": "strain=DSM 100212", "accession": "GCA_003003355.1", "taxid": 1652492, "species_taxid": 1652492, "relation_to_type": "type", "validated": true, "ani": 75.5654, "matched_fragments": 50, "total_fragments": 1812, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002844375.1", "gtdb_species": "s__Thalassospira marina", "ani": 100.0, "matched_fragments": 1811, "total_fragments": 1812, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Thalassospiraceae;g__Thalassospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.72", "min_intra_species_ani": "97.72", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_003326755.1", 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povalilytica", "ani": 79.2966, "matched_fragments": 675, "total_fragments": 1812, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Thalassospiraceae;g__Thalassospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.81", "min_intra_species_ani": "97.62", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_001613805.1", "gtdb_species": "s__Thalassospira lucentensis_A", "ani": 79.274, "matched_fragments": 730, "total_fragments": 1812, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Thalassospiraceae;g__Thalassospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.23", "min_intra_species_ani": "97.17", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_001613795.1", "gtdb_species": "s__Thalassospira sp001613795", "ani": 79.0162, "matched_fragments": 591, "total_fragments": 1812, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Thalassospiraceae;g__Thalassospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.77", "min_intra_species_ani": "97.25", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_000763295.1", "gtdb_species": "s__Thalassospira australica", "ani": 78.888, "matched_fragments": 587, "total_fragments": 1812, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Thalassospiraceae;g__Thalassospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.275, "cell_length": 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