{ "type": "genome", "identifier": "GCF_002846395.1", "organism": "Pontibacter ramchanderi", "title": "Pontibacter ramchanderi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002846395.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444683", "wgs_master": "PJMU00000000.1", "refseq_category": "reference genome", "taxid": "1179743", "species_taxid": "1179743", "organism_name": "Pontibacter ramchanderi", "infraspecific_name": "strain=LP43", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/21", "asm_name": "ASM284639v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_002846395.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/846/395/GCF_002846395.1_ASM284639v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4430618", "genome_size_ungapped": "4430618", "gc_percent": "51.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002846395.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3852", "protein_coding_gene_count": "3799", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-21", "dateModified": "2017-12-21", "datePublished": "2017-12-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Pontibacter ramchanderi" ], "sample_taxid": [ "1179743" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": 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"ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pontibacter amylolyticus", "strain": "strain=CGMCC 1.12749", "accession": "GCA_014638845.1", "taxid": 1424080, "species_taxid": 1424080, "relation_to_type": "type", "validated": true, "ani": 84.7875, "matched_fragments": 1198, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter indicus", "strain": "strain=LP100", "accession": "GCA_900156345.1", "taxid": 1317125, "species_taxid": 1317125, "relation_to_type": "type", "validated": true, "ani": 84.7714, "matched_fragments": 1179, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter virosus", "strain": "strain=DSM 100231", "accession": "GCA_003096355.1", "taxid": 1765052, "species_taxid": 1765052, "relation_to_type": "type", "validated": true, "ani": 83.9694, "matched_fragments": 1163, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter lucknowensis", "strain": "strain=DM9", "accession": "GCA_900156415.1", "taxid": 1077936, "species_taxid": 1077936, "relation_to_type": "type", "validated": true, "ani": 83.7235, "matched_fragments": 1127, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter aquaedesilientis", "strain": "strain=JH31", "accession": "GCA_014773225.1", "taxid": 2766980, "species_taxid": 2766980, "relation_to_type": "type", "validated": true, "ani": 81.0679, "matched_fragments": 816, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ruber", "strain": "strain=JC213", "accession": "GCA_023630205.1", "taxid": 1343895, "species_taxid": 1343895, "relation_to_type": "type", "validated": true, "ani": 78.9053, "matched_fragments": 610, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter mangrovi", "strain": 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"s__Pontibacter indicus", "ani": 84.773, "matched_fragments": 1179, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003096355.1", "gtdb_species": "s__Pontibacter virosus", "ani": 83.9752, "matched_fragments": 1162, "total_fragments": 1469, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900156415.1", "gtdb_species": "s__Pontibacter lucknowensis", "ani": 83.7315, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pontibacter", "ramchanderi" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }