{
    "type": "genome",
    "identifier": "GCF_002846475.1",
    "organism": "Saccharopolyspora spinosa",
    "title": "Saccharopolyspora spinosa",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002846475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05216473",
        "wgs_master": "PJNB00000000.1",
        "refseq_category": "reference genome",
        "taxid": "60894",
        "species_taxid": "60894",
        "organism_name": "Saccharopolyspora spinosa",
        "infraspecific_name": "strain=DSM 44228",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/12/21",
        "asm_name": "ASM284647v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_002846475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/846/475/GCF_002846475.1_ASM284647v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "9020646",
        "genome_size_ungapped": "9020646",
        "gc_percent": "68.000000",
        "replicon_count": "0",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002846475.1-RS_2024_05_17",
        "annotation_date": "2024-05-17",
        "total_gene_count": "8021",
        "protein_coding_gene_count": "7703",
        "non_coding_gene_count": "75",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-12-21",
    "dateModified": "2017-12-21",
    "datePublished": "2017-12-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Saccharopolyspora spinosa"
        ],
        "sample_taxid": [
            "60894"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "2.421 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "9020646",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "9020646",
        "N50 (bp)": "9020646",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.9",
        "Number of CDSs": "8139",
        "Average Protein Length": "310.8",
        "Coding Ratio (%)": "84.1",
        "Number of rRNAs": "14",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Saccharopolyspora spinosa",
                "strain": "strain=DSM 44228",
                "accession": "GCA_002846475.1",
                "taxid": 60894,
                "species_taxid": 60894,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 3006,
                "total_fragments": 3006,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Saccharopolyspora spinosa",
                "strain": "strain=NRRL 18395",
                "accession": "GCA_000194155.1",
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                "species_taxid": 60894,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.7732,
                "matched_fragments": 2818,
                "total_fragments": 3006,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Saccharopolyspora shandongensis",
                "strain": "strain=CGMCC 4.3530",
                "accession": "GCA_900106995.1",
                "taxid": 418495,
                "species_taxid": 418495,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1767,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharopolyspora elongata",
                "strain": "strain=7K502",
                "accession": "GCA_004348985.1",
                "taxid": 2530387,
                "species_taxid": 2530387,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2476,
                "matched_fragments": 1776,
                "total_fragments": 3006,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharopolyspora phatthalungensis",
                "strain": "strain=DSM 45584",
                "accession": "GCA_014203395.1",
                "taxid": 664693,
                "species_taxid": 664693,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.4505,
                "matched_fragments": 1566,
                "total_fragments": 3006,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharopolyspora hirsuta",
                "strain": "strain=VKM Ac-666",
                "accession": "GCA_008630535.1",
                "taxid": 1837,
                "species_taxid": 1837,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.0689,
                "matched_fragments": 1450,
                "total_fragments": 3006,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharopolyspora hordei",
                "strain": "strain=DSM 44065",
                "accession": "GCA_013410345.1",
                "taxid": 1838,
                "species_taxid": 1838,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3508,
                "matched_fragments": 1292,
                "total_fragments": 3006,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_000194155.1",
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                "ani": 99.7747,
                "matched_fragments": 2817,
                "total_fragments": 3006,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.78",
                "min_intra_species_ani": "99.78",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014697215.1",
                "gtdb_species": "s__Saccharopolyspora pogona",
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                "matched_fragments": 2157,
                "total_fragments": 3006,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.67",
                "min_intra_species_ani": "95.67",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900106995.1",
                "gtdb_species": "s__Saccharopolyspora shandongensis",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004348985.1",
                "gtdb_species": "s__Saccharopolyspora sp004348985",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_014203395.1",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018141105.1",
                "gtdb_species": "s__Saccharopolyspora_D erythraea_A",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora_D",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.318,
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        "coding_genes": null,
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        "gram_stain": 1.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 0.0,
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        "filament_cell_shape": 1.0,
        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Saccharopolyspora",
        "spinosa"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}