{ "type": "genome", "identifier": "GCF_002847305.1", "organism": "Paracoccus tegillarcae", "title": "Paracoccus tegillarcae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002847305.1", "bioproject": "PRJNA224116", "biosample": "SAMN08010293", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1529068", "species_taxid": "1529068", "organism_name": "Paracoccus tegillarcae", "infraspecific_name": "strain=BM15", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/23", "asm_name": "ASM284730v1", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_002847305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/847/305/GCF_002847305.1_ASM284730v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3954736", "genome_size_ungapped": "3954736", "gc_percent": "62.000000", "replicon_count": "4", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002847305.1-RS_2024_04_05", "annotation_date": "2024-04-05", "total_gene_count": "3935", "protein_coding_gene_count": "3822", "non_coding_gene_count": "55", "pubmed_id": "31251720" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-23", "dateModified": "2017-12-23", "datePublished": "2017-12-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccus tegillarcae" ], "sample_taxid": [ "1529068" ], "sample_host_organism": [ "Tegillarca granosa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.095 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3954736", "Number of Sequences": "4", "Longest Sequences (bp)": "3759886", "N50 (bp)": "3759886", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.2", "Number of CDSs": "3896", "Average Protein Length": "306.4", "Coding Ratio (%)": "90.6", "Number of rRNAs": "6", "Number of tRNAs": "49", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paracoccus tegillarcae", "strain": "strain=BM15", "accession": "GCA_002847305.1", "taxid": 1529068, "species_taxid": 1529068, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1313, "total_fragments": 1316, 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"matched_fragments": 515, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus mutanolyticus", "strain": "strain=RSP-02", "accession": "GCA_003285265.1", "taxid": 1499308, "species_taxid": 1499308, "relation_to_type": "type", "validated": true, "ani": 78.7313, "matched_fragments": 424, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002847305.1", "gtdb_species": "s__Paracoccus sp002847305", "ani": 100.0, "matched_fragments": 1313, "total_fragments": 1316, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, 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