{ "type": "genome", "identifier": "GCF_002847505.1", "organism": "Acidithiobacillus marinus", "title": "Acidithiobacillus marinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Okayama University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002847505.1", "bioproject": "PRJNA224116", "biosample": "SAMN06368307", "wgs_master": "MXAV00000000.1", "refseq_category": "reference genome", "taxid": "187490", "species_taxid": "187490", "organism_name": "Acidithiobacillus marinus", "infraspecific_name": "strain=SH", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/12/27", "asm_name": "ASM284750v1", "asm_submitter": "Okayama University", "gbrs_paired_asm": "GCA_002847505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/847/505/GCF_002847505.1_ASM284750v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2903611", "genome_size_ungapped": "2903611", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "65", "contig_count": "65", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002847505.1-RS_2024_07_29", "annotation_date": "2024-07-29", "total_gene_count": "3019", "protein_coding_gene_count": "2918", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-12-27", "dateModified": "2017-12-27", "datePublished": "2017-12-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidithiobacillus marinus" ], "sample_taxid": [ "187490" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Okayama, 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015100155.1", "gtdb_species": "s__Acidithiobacillus sp015100155", "ani": 80.785, "matched_fragments": 512, "total_fragments": 934, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018853445.1", "gtdb_species": "s__Acidithiobacillus sp018853445", "ani": 80.5541, "matched_fragments": 475, "total_fragments": 934, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018854495.1", "gtdb_species": "s__Acidithiobacillus ferrooxidans_C", "ani": 77.9701, "matched_fragments": 216, "total_fragments": 934, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.186, "cell_length": 0.066, "doubling_h": 1.264, "growth_tmp": 31.057, "optimum_tmp": 31.4, "optimum_ph": 2.0, "genome_size": 3251594.883, "gc_content": 57.129, "coding_genes": 2959.333, "rRNA16S_genes": 2.0, "tRNA_genes": 55.133, "gram_stain": 0.0, 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