{
    "type": "genome",
    "identifier": "GCF_002849515.1",
    "organism": "Lacticaseibacillus rhamnosus",
    "title": "Lacticaseibacillus rhamnosus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Connecticut",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002849515.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08239957",
        "wgs_master": "PKQF00000000.1",
        "refseq_category": "na",
        "taxid": "47715",
        "species_taxid": "47715",
        "organism_name": "Lacticaseibacillus rhamnosus",
        "infraspecific_name": "strain=NRRL B-442",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/01/02",
        "asm_name": "ASM284951v1",
        "asm_submitter": "University of Connecticut",
        "gbrs_paired_asm": "GCA_002849515.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/849/515/GCF_002849515.1_ASM284951v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2974909",
        "genome_size_ungapped": "2974909",
        "gc_percent": "46.500000",
        "replicon_count": "0",
        "scaffold_count": "111",
        "contig_count": "111",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002849515.1-RS_2024_11_26",
        "annotation_date": "2024-11-26",
        "total_gene_count": "2811",
        "protein_coding_gene_count": "2656",
        "non_coding_gene_count": "77",
        "pubmed_id": "29449386"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-01-02",
    "dateModified": "2018-01-02",
    "datePublished": "2018-01-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lacticaseibacillus rhamnosus"
        ],
        "sample_taxid": [
            "47715"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.851 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2974909",
        "Number of Sequences": "111",
        "Longest Sequences (bp)": "364043",
        "N50 (bp)": "141613",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.7",
        "Number of CDSs": "2762",
        "Average Protein Length": "300.9",
        "Coding Ratio (%)": "83.8",
        "Number of rRNAs": "5",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Lacticaseibacillus rhamnosus",
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                "accession": "GCA_002849515.1",
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                "species_taxid": 47715,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "total_fragments": 967,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lacticaseibacillus rhamnosus",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9883,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lacticaseibacillus rhamnosus",
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                "accession": "GCA_001435405.1",
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lacticaseibacillus rhamnosus",
                "strain": "strain=NBRC 3425",
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                "species_taxid": 47715,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lacticaseibacillus zeae",
                "strain": "strain=KCTC 3804",
                "accession": "GCA_000260435.1",
                "taxid": 57037,
                "species_taxid": 57037,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0099,
                "matched_fragments": 534,
                "total_fragments": 967,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacticaseibacillus chiayiensis",
                "strain": "strain=NCYUAS",
                "accession": "GCA_004123795.1",
                "taxid": 2100821,
                "species_taxid": 2100821,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6529,
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                "total_fragments": 967,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacticaseibacillus mingshuiensis",
                "strain": "strain=117-1",
                "accession": "GCA_016861785.1",
                "taxid": 2799574,
                "species_taxid": 2799574,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3567,
                "matched_fragments": 55,
                "total_fragments": 967,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900636965.1",
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                "total_fragments": 967,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.40",
                "min_intra_species_ani": "96.73",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 237,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000829055.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "95.69",
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                "num_clustered_genomes": 19,
                "status": "-"
            },
            {
                "accession": "GCF_000260435.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.07",
                "min_intra_species_ani": "96.92",
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                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_004123795.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
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            },
            {
                "accession": "GCF_000829035.1",
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            },
            {
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                "gtdb_species": "s__Lacticaseibacillus sp016861765",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003946465.1",
                "gtdb_species": "s__Lacticaseibacillus hegangensis",
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        ]
    },
    "_bac2feature": {
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        "cell_length": null,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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        "coccobacillus_cell_shape": null,
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    },
    "_genome_taxon": [
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        "rhamnosus"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}