{ "type": "genome", "identifier": "GCF_002858675.1", "organism": "Chimaeribacter californicus", "title": "Chimaeribacter californicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Utah", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002858675.1", "bioproject": "PRJNA224116", "biosample": "SAMN08166493", "wgs_master": "PJZF00000000.1", "refseq_category": "reference genome", "taxid": "2060067", "species_taxid": "2060067", "organism_name": "Chimaeribacter californicus", "infraspecific_name": "strain=2015-Iso6", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/01/03", "asm_name": "ASM285867v1", "asm_submitter": "University of Utah", "gbrs_paired_asm": "GCA_002858675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/858/675/GCF_002858675.1_ASM285867v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4987908", "genome_size_ungapped": "4987908", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "133", "contig_count": "133", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002858675.1-RS_2024_04_02", "annotation_date": "2024-04-02", "total_gene_count": "4671", "protein_coding_gene_count": "4490", "non_coding_gene_count": "97", "pubmed_id": "32141808" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-01-03", "dateModified": "2018-01-03", "datePublished": "2018-01-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Chimaeribacter californicus" ], "sample_taxid": [ "2060067" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: California" ], "sample_host_location_id": [], "data_size": "1.407 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4987908", "Number of Sequences": "133", "Longest Sequences (bp)": "649390", "N50 (bp)": "198465", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.5", "Number of CDSs": "4488", "Average Protein Length": "316.7", "Coding Ratio (%)": "85.5", "Number of rRNAs": "4", "Number of tRNAs": "77", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chimaeribacter coloradensis", "strain": "strain=2016-Iso4", "accession": "GCA_002858715.1", "taxid": 2060068, "species_taxid": 2060068, "relation_to_type": "type", "validated": true, "ani": 89.8821, "matched_fragments": 1308, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia nevei", "strain": "strain=S15", "accession": "GCA_008364245.1", "taxid": 2703794, "species_taxid": 2703794, "relation_to_type": "type", "validated": true, "ani": 80.7616, "matched_fragments": 718, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia ficaria", "strain": "strain=NCTC12148", "accession": "GCA_900187015.1", "taxid": 61651, "species_taxid": 61651, "relation_to_type": "type", "validated": true, "ani": 80.7257, "matched_fragments": 793, "total_fragments": 1611, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia marcescens", "strain": "strain=ATCC 13880 substr. 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