{ "type": "genome", "identifier": "GCF_002858845.1", "organism": "Caulobacter flavus", "title": "Caulobacter flavus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Beijing Academy of Agriculture and Forestry Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002858845.1", "bioproject": "PRJNA224116", "biosample": "SAMN08111327", "wgs_master": "PJRQ00000000.1", "refseq_category": "na", "taxid": "1679497", "species_taxid": "1679497", "organism_name": "Caulobacter flavus", "infraspecific_name": "strain=CGMCC1 15093", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/01/03", "asm_name": "ASM285884v1", "asm_submitter": "Beijing Academy of Agriculture and Forestry Science", "gbrs_paired_asm": "GCA_002858845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/858/845/GCF_002858845.1_ASM285884v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5832535", "genome_size_ungapped": "5832535", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "57", "contig_count": "57", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002858845.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "5454", "protein_coding_gene_count": "5309", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-01-03", "dateModified": "2018-01-03", "datePublished": "2018-01-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Caulobacter flavus" ], "sample_taxid": [ "1679497" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hefei" ], "sample_host_location_id": [], "data_size": "1.575 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5832535", "Number of Sequences": "57", "Longest Sequences (bp)": "365098", "N50 (bp)": "160178", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.2", "Number of CDSs": "5333", "Average Protein Length": "323.1", "Coding Ratio (%)": "88.6", "Number of rRNAs": "2", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Caulobacter flavus", "strain": "strain=CGMCC1 15093", "accession": "GCA_002858845.1", "taxid": 1679497, "species_taxid": 1679497, "relation_to_type": "type", "validated": true, "ani": 99.9999, "matched_fragments": 1910, "total_fragments": 1915, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Caulobacter flavus", "strain": "strain=RHGG3", "accession": "GCA_003722335.1", "taxid": 1679497, "species_taxid": 1679497, "relation_to_type": "type", "validated": true, "ani": 99.9848, "matched_fragments": 1849, "total_fragments": 1915, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Caulobacter radicis", "strain": "strain=695", "accession": "GCA_003094615.1", "taxid": 2172650, "species_taxid": 2172650, "relation_to_type": "type", "validated": true, "ani": 92.7308, "matched_fragments": 1526, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter zeae", "strain": "strain=410", "accession": "GCA_002858925.1", "taxid": 2055137, "species_taxid": 2055137, "relation_to_type": "type", "validated": true, "ani": 92.638, "matched_fragments": 1508, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter endophyticus", "strain": "strain=774", "accession": "GCA_003116815.1", "taxid": 2172652, "species_taxid": 2172652, "relation_to_type": "type", "validated": true, "ani": 92.1255, "matched_fragments": 1487, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter hibisci", "strain": "strain=KACC 18849", "accession": "GCA_016135805.1", "taxid": 2035993, "species_taxid": 2035993, "relation_to_type": "type", "validated": true, "ani": 89.7654, "matched_fragments": 1375, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter rhizosphaerae", "strain": "strain=CGMCC 1.15915", "accession": "GCA_014645055.1", "taxid": 2010972, "species_taxid": 2010972, "relation_to_type": "type", "validated": true, "ani": 84.3593, "matched_fragments": 1139, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter segnis", "strain": "strain=TK0059", "accession": "GCA_003015125.1", "taxid": 88688, "species_taxid": 88688, "relation_to_type": "type", "validated": true, "ani": 83.5684, "matched_fragments": 1001, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter segnis", "strain": "strain=ATCC 21756", "accession": "GCA_000092285.1", "taxid": 88688, "species_taxid": 88688, "relation_to_type": "type", "validated": true, "ani": 83.4855, "matched_fragments": 1014, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter vibrioides", "strain": "strain=DSM 9893", "accession": "GCA_002858865.1", "taxid": 155892, "species_taxid": 155892, "relation_to_type": "type", "validated": true, "ani": 83.335, "matched_fragments": 901, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium aquaticum", "strain": "strain=KACC 18306", "accession": "GCA_022695515.1", "taxid": 1763816, "species_taxid": 1763816, "relation_to_type": "type", "validated": true, "ani": 79.4122, "matched_fragments": 729, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium glaciei", "strain": "strain=20VBR1", "accession": "GCA_016772415.2", "taxid": 2803784, "species_taxid": 2803784, "relation_to_type": "type", "validated": true, "ani": 79.0709, "matched_fragments": 655, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas albigilva", "strain": "strain=KEME 9005-016", "accession": "GCA_023503965.1", "taxid": 1312364, "species_taxid": 1312364, "relation_to_type": "type", "validated": true, "ani": 78.5899, "matched_fragments": 563, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas 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