{ "type": "genome", "identifier": "GCF_002865605.1", "organism": "Paracoccus jeotgali", "title": "Paracoccus jeotgali", "description": "na", "data type": "Genome sequencing and assembly", "organization": "World Institute of Kimchi", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002865605.1", "bioproject": "PRJNA224116", "biosample": "SAMN08211554", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2065379", "species_taxid": "2065379", "organism_name": "Paracoccus jeotgali", "infraspecific_name": "strain=CBA4604", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/01/08", "asm_name": "ASM286560v1", "asm_submitter": "World Institute of Kimchi", "gbrs_paired_asm": "GCA_002865605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/865/605/GCF_002865605.1_ASM286560v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3299166", "genome_size_ungapped": "3299166", "gc_percent": "66.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002865605.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "3219", "protein_coding_gene_count": "3079", "non_coding_gene_count": "56", "pubmed_id": "31054135" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-01-08", "dateModified": "2018-01-08", "datePublished": "2018-01-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccus jeotgali" ], "sample_taxid": [ "2065379" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Yeosu" ], "sample_host_location_id": [], "data_size": "0.896 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3299166", "Number of Sequences": "3", "Longest Sequences (bp)": "3121136", "N50 (bp)": "3121136", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.5", "Number of CDSs": "3209", "Average Protein Length": "312.4", "Coding Ratio (%)": "91.2", "Number of rRNAs": "6", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paracoccus jeotgali", "strain": "strain=CBA4604", "accession": "GCA_002865605.1", "taxid": 2065379, "species_taxid": 2065379, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1098, "total_fragments": 1098, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paracoccus xiamenensis", "strain": "strain=12-3", "accession": "GCA_011308835.1", "taxid": 2714901, "species_taxid": 2714901, "relation_to_type": "type", "validated": true, "ani": 82.4248, "matched_fragments": 638, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus isoporae", "strain": "strain=DSM 22220", "accession": "GCA_900101865.1", "taxid": 591205, "species_taxid": 591205, "relation_to_type": "type", "validated": true, "ani": 81.9249, "matched_fragments": 622, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aurantiacus", "strain": "strain=TK008", "accession": "GCA_007993065.1", "taxid": 2599412, "species_taxid": 2599412, "relation_to_type": "type", "validated": true, "ani": 81.2463, "matched_fragments": 595, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus 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"GCA_003594835.1", "taxid": 1276757, "species_taxid": 1276757, "relation_to_type": "type", "validated": true, "ani": 80.9543, "matched_fragments": 557, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus lutimaris", "strain": "strain=CECT 8525", "accession": "GCA_003337565.1", "taxid": 1490030, "species_taxid": 1490030, "relation_to_type": "type", "validated": true, "ani": 80.8872, "matched_fragments": 550, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus pantotrophus", "strain": "strain=DSM 2944", "accession": "GCA_008824185.1", "taxid": 82367, "species_taxid": 82367, "relation_to_type": "type", "validated": true, "ani": 80.8863, "matched_fragments": 575, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus pantotrophus", "strain": "strain=DSM 2944", "accession": "GCA_003633525.1", "taxid": 82367, "species_taxid": 82367, "relation_to_type": "type", "validated": true, "ani": 80.8357, "matched_fragments": 567, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus halophilus", "strain": "strain=CGMCC 1.6117", "accession": "GCA_900111785.1", "taxid": 376733, "species_taxid": 376733, "relation_to_type": "type", "validated": true, "ani": 80.7896, "matched_fragments": 529, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus halophilus", "strain": "strain=JCM 14014", "accession": "GCA_000763905.1", "taxid": 376733, "species_taxid": 376733, "relation_to_type": "type", "validated": true, "ani": 80.6636, "matched_fragments": 531, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus denitrificans", "strain": "strain=NBRC 102528", "accession": "GCA_007989485.1", "taxid": 266, "species_taxid": 266, "relation_to_type": "type", "validated": true, "ani": 80.5092, "matched_fragments": 555, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus zhejiangensis", "strain": "strain=J6", "accession": "GCA_002847445.1", "taxid": 1077935, "species_taxid": 1077935, "relation_to_type": "type", "validated": true, "ani": 80.3724, "matched_fragments": 549, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus mutanolyticus", "strain": "strain=RSP-02", "accession": "GCA_003285265.1", "taxid": 1499308, "species_taxid": 1499308, "relation_to_type": "type", "validated": true, "ani": 80.1986, "matched_fragments": 502, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus nototheniae", "strain": "strain=I-41R45", "accession": "GCA_004335005.1", "taxid": 2489002, "species_taxid": 2489002, "relation_to_type": "type", "validated": true, "ani": 79.9116, "matched_fragments": 502, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus salsus", "strain": "strain=EGI L200073", "accession": "GCA_021556615.1", "taxid": 2911061, "species_taxid": 2911061, "relation_to_type": "type", "validated": true, "ani": 79.7522, "matched_fragments": 459, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus everestensis", "strain": "strain=S8-55", "accession": "GCA_021491915.1", "taxid": 2903900, "species_taxid": 2903900, "relation_to_type": "type", "validated": true, "ani": 79.6825, "matched_fragments": 430, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus bogoriensis", "strain": "strain=BOG6", "accession": "GCA_019431455.1", "taxid": 242065, "species_taxid": 242065, "relation_to_type": "type", "validated": true, "ani": 79.6107, "matched_fragments": 474, "total_fragments": 1098, "ani_threshold": 95, "status": 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