{ "type": "genome", "identifier": "GCF_002866825.1", "organism": "Pseudohalioglobus lutimaris", "title": "Pseudohalioglobus lutimaris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002866825.1", "bioproject": "PRJNA224116", "biosample": "SAMN08281021", "wgs_master": "PKUS00000000.1", "refseq_category": "reference genome", "taxid": "1737061", "species_taxid": "1737061", "organism_name": "Pseudohalioglobus lutimaris", "infraspecific_name": "strain=HF004", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/01/08", "asm_name": "ASM286682v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_002866825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/866/825/GCF_002866825.1_ASM286682v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4664827", "genome_size_ungapped": "4664827", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "79", "contig_count": "79", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002866825.1-RS_2024_04_15", "annotation_date": "2024-04-15", "total_gene_count": "4176", "protein_coding_gene_count": "4098", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-01-08", "dateModified": "2018-01-08", "datePublished": "2018-01-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudohalioglobus lutimaris" ], "sample_taxid": [ "1737061" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Weihai" ], "sample_host_location_id": [], "data_size": "1.332 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4664827", "Number of Sequences": "79", "Longest Sequences (bp)": "551578", "N50 (bp)": "221513", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.2", "Number of CDSs": "4148", "Average Protein Length": "333.6", "Coding Ratio (%)": "89.0", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudohalioglobus lutimaris", "strain": "strain=HF004", "accession": "GCA_002866825.1", "taxid": 1737061, "species_taxid": 1737061, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1518, "total_fragments": 1523, 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