{
    "type": "genome",
    "identifier": "GCF_002866925.1",
    "organism": "Cohaesibacter celericrescens",
    "title": "Cohaesibacter celericrescens",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shandong University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002866925.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08281243",
        "wgs_master": "PKUQ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2067669",
        "species_taxid": "2067669",
        "organism_name": "Cohaesibacter celericrescens",
        "infraspecific_name": "strain=H1304",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/01/08",
        "asm_name": "ASM286692v1",
        "asm_submitter": "Shandong University",
        "gbrs_paired_asm": "GCA_002866925.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/866/925/GCF_002866925.1_ASM286692v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5015406",
        "genome_size_ungapped": "5015406",
        "gc_percent": "51.000000",
        "replicon_count": "0",
        "scaffold_count": "59",
        "contig_count": "59",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002866925.1-RS_2024_04_30",
        "annotation_date": "2024-04-30",
        "total_gene_count": "4497",
        "protein_coding_gene_count": "4400",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-01-08",
    "dateModified": "2018-01-08",
    "datePublished": "2018-01-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cohaesibacter celericrescens"
        ],
        "sample_taxid": [
            "2067669"
        ],
        "sample_host_organism": [
            "catfish"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Weihai"
        ],
        "sample_host_location_id": [],
        "data_size": "1.432 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 83.33,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5015406",
        "Number of Sequences": "59",
        "Longest Sequences (bp)": "663041",
        "N50 (bp)": "425421",
        "Gap Ratio (%)": "0.000419",
        "GCcontent (%)": "50.8",
        "Number of CDSs": "4509",
        "Average Protein Length": "316.8",
        "Coding Ratio (%)": "85.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Cohaesibacter celericrescens",
                "strain": "strain=H1304",
                "accession": "GCA_002866925.1",
                "taxid": 2067669,
                "species_taxid": 2067669,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1615,
                "total_fragments": 1644,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Cohaesibacter intestini",
                "strain": "strain=YE-B6",
                "accession": "GCA_003324485.1",
                "taxid": 2211145,
                "species_taxid": 2211145,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5656,
                "matched_fragments": 369,
                "total_fragments": 1644,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cohaesibacter marisflavi",
                "strain": "strain=CGMCC 1.9157",
                "accession": "GCA_900115225.1",
                "taxid": 655353,
                "species_taxid": 655353,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4909,
                "matched_fragments": 291,
                "total_fragments": 1644,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cohaesibacter haloalkalitolerans",
                "strain": "strain=JC131",
                "accession": "GCA_003574655.1",
                "taxid": 1162980,
                "species_taxid": 1162980,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3559,
                "matched_fragments": 259,
                "total_fragments": 1644,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cohaesibacter gelatinilyticus",
                "strain": "strain=DSM 18289",
                "accession": "GCA_900215605.1",
                "taxid": 372072,
                "species_taxid": 372072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0827,
                "matched_fragments": 183,
                "total_fragments": 1644,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 83.33,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002866925.1",
                "gtdb_species": "s__Cohaesibacter celericrescens",
                "ani": 100.0,
                "matched_fragments": 1612,
                "total_fragments": 1644,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Cohaesibacteraceae;g__Cohaesibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003324485.1",
                "gtdb_species": "s__Cohaesibacter intestini",
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                "matched_fragments": 369,
                "total_fragments": 1644,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Cohaesibacteraceae;g__Cohaesibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.38",
                "min_intra_species_ani": "98.38",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900215505.1",
                "gtdb_species": "s__Cohaesibacter sp900215505",
                "ani": 77.5398,
                "matched_fragments": 301,
                "total_fragments": 1644,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Cohaesibacteraceae;g__Cohaesibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900115225.1",
                "gtdb_species": "s__Cohaesibacter marisflavi",
                "ani": 77.4941,
                "matched_fragments": 292,
                "total_fragments": 1644,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Cohaesibacteraceae;g__Cohaesibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003574655.1",
                "gtdb_species": "s__Cohaesibacter haloalkalitolerans",
                "ani": 77.3453,
                "matched_fragments": 260,
                "total_fragments": 1644,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Cohaesibacteraceae;g__Cohaesibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900215605.1",
                "gtdb_species": "s__Cohaesibacter gelatinilyticus",
                "ani": 77.0679,
                "matched_fragments": 184,
                "total_fragments": 1644,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Cohaesibacteraceae;g__Cohaesibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.83",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.353,
        "cell_length": 0.278,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 27.222,
        "optimum_ph": 7.666,
        "genome_size": 5268987.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Cohaesibacter",
        "celericrescens"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}