{
    "type": "genome",
    "identifier": "GCF_002871915.2",
    "organism": "Aerococcus loyolae",
    "title": "Aerococcus loyolae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Loyola University Chicago",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002871915.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07511386",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "2976809",
        "species_taxid": "2976809",
        "organism_name": "Aerococcus loyolae",
        "infraspecific_name": "strain=UMB0080",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/06/06",
        "asm_name": "ASM287191v2",
        "asm_submitter": "Loyola University Chicago",
        "gbrs_paired_asm": "GCA_002871915.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/871/915/GCF_002871915.2_ASM287191v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2034560",
        "genome_size_ungapped": "2034560",
        "gc_percent": "42.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002871915.2-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "1851",
        "protein_coding_gene_count": "1759",
        "non_coding_gene_count": "76",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-06-06",
    "dateModified": "2023-06-06",
    "datePublished": "2023-06-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aerococcus loyolae"
        ],
        "sample_taxid": [
            "2976809"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Maywood, IL"
        ],
        "sample_host_location_id": [],
        "data_size": "0.574 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2034560",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2034560",
        "N50 (bp)": "2034560",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.0",
        "Number of CDSs": "1779",
        "Average Protein Length": "329.1",
        "Coding Ratio (%)": "86.3",
        "Number of rRNAs": "12",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Aerococcus urinae",
                "strain": "strain=CCUG36881",
                "accession": "GCA_001543175.1",
                "taxid": 1376,
                "species_taxid": 1376,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 91.4293,
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                "total_fragments": 678,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aerococcus urinae",
                "strain": "strain=FDAARGOS_911",
                "accession": "GCA_016026975.1",
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                "species_taxid": 1376,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 91.3467,
                "matched_fragments": 587,
                "total_fragments": 678,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aerococcus urinae",
                "strain": "strain=NBRC 15544",
                "accession": "GCA_001544335.1",
                "taxid": 1376,
                "species_taxid": 1376,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 91.3009,
                "matched_fragments": 577,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aerococcus urinae",
                "strain": "strain=ATCC 51268",
                "accession": "GCA_002087935.1",
                "taxid": 1376,
                "species_taxid": 1376,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 91.2629,
                "matched_fragments": 578,
                "total_fragments": 678,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aerococcus sanguinicola",
                "strain": "strain=CCUG43001",
                "accession": "GCA_001543145.1",
                "taxid": 119206,
                "species_taxid": 119206,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9418,
                "matched_fragments": 69,
                "total_fragments": 678,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003286825.1",
                "gtdb_species": "s__Aerococcus urinae_B",
                "ani": 98.7135,
                "matched_fragments": 611,
                "total_fragments": 678,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.01",
                "min_intra_species_ani": "98.40",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 11,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002884575.1",
                "gtdb_species": "s__Aerococcus urinae_D",
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                "matched_fragments": 591,
                "total_fragments": 678,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.27",
                "min_intra_species_ani": "96.37",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 29,
                "status": "-"
            },
            {
                "accession": "GCF_003286645.1",
                "gtdb_species": "s__Aerococcus urinae_C",
                "ani": 92.3858,
                "matched_fragments": 575,
                "total_fragments": 678,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.75",
                "min_intra_species_ani": "95.19",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_000193205.1",
                "gtdb_species": "s__Aerococcus urinae_A",
                "ani": 91.4377,
                "matched_fragments": 587,
                "total_fragments": 678,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001543175.1",
                "gtdb_species": "s__Aerococcus urinae",
                "ani": 91.4313,
                "matched_fragments": 585,
                "total_fragments": 678,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 26,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 33.312,
        "optimum_tmp": 37.0,
        "optimum_ph": 9.6,
        "genome_size": 1860439.23,
        "gc_content": 41.769,
        "coding_genes": 1702.205,
        "rRNA16S_genes": 4.75,
        "tRNA_genes": 58.166,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.142,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.857,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Aerococcus",
        "loyolae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}