{ "type": "genome", "identifier": "GCF_002872255.1", "organism": "Companilactobacillus nuruki", "title": "Companilactobacillus nuruki", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002872255.1", "bioproject": "PRJNA224116", "biosample": "SAMN07125454", "wgs_master": "NIPR00000000.1", "refseq_category": "reference genome", "taxid": "1993540", "species_taxid": "1993540", "organism_name": "Companilactobacillus nuruki", "infraspecific_name": "strain=SYF10-1a", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/01/10", "asm_name": "ASM287225v1", "asm_submitter": "National Institute of Agricultural Sciences", "gbrs_paired_asm": "GCA_002872255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/872/255/GCF_002872255.1_ASM287225v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2582291", "genome_size_ungapped": "2582291", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002872255.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "2604", "protein_coding_gene_count": "2509", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-01-10", "dateModified": "2018-01-10", "datePublished": "2018-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Companilactobacillus nuruki" ], "sample_taxid": [ "1993540" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeonju" ], "sample_host_location_id": [], "data_size": "0.728 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2582291", "Number of Sequences": "64", "Longest Sequences (bp)": "220801", "N50 (bp)": "102702", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.2", "Number of CDSs": "2559", "Average Protein Length": "295.3", "Coding Ratio (%)": "87.8", "Number of rRNAs": "4", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Companilactobacillus nuruki", "strain": "strain=SYF10-1a", "accession": "GCA_002872255.1", "taxid": 1993540, "species_taxid": 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