{ "type": "genome", "identifier": "GCF_002879615.1", "organism": "Billgrantia endophytica", "title": "Billgrantia endophytica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "zhejiang university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002879615.1", "bioproject": "PRJNA224116", "biosample": "SAMN08324437", "wgs_master": "PNRF00000000.1", "refseq_category": "reference genome", "taxid": "2033802", "species_taxid": "2033802", "organism_name": "Billgrantia endophytica", "infraspecific_name": "strain=MC28", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/01/13", "asm_name": "ASM287961v1", "asm_submitter": "zhejiang university", "gbrs_paired_asm": "GCA_002879615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/879/615/GCF_002879615.1_ASM287961v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4980457", "genome_size_ungapped": "4979957", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "50", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002879615.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4663", "protein_coding_gene_count": "4519", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-01-13", "dateModified": "2018-01-13", "datePublished": "2018-01-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Billgrantia endophytica" ], "sample_taxid": [ "2033802" ], "sample_host_organism": [ "Populus euphratica" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.399 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4980457", "Number of Sequences": "50", "Longest Sequences (bp)": "331351", "N50 (bp)": "150043", "Gap Ratio (%)": "0.010220", "GCcontent (%)": "62.1", "Number of CDSs": "4585", "Average Protein Length": "318.7", "Coding Ratio (%)": "88.0", "Number of rRNAs": "1", "Number of tRNAs": "59", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas endophytica", "strain": "strain=MC28", "accession": "GCA_002879615.1", "taxid": 2033802, "species_taxid": 2033802, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1639, "total_fragments": 1642, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halomonas alkalisoli", "strain": "strain=M5N1S17", "accession": "GCA_021412585.1", "taxid": 2907158, "species_taxid": 2907158, "relation_to_type": "type", "validated": true, "ani": 83.5403, "matched_fragments": 944, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas montanilacus", "strain": "strain=PYC7W", "accession": "GCA_003336675.1", "taxid": 2282305, "species_taxid": 2282305, "relation_to_type": "type", "validated": true, "ani": 82.9976, "matched_fragments": 906, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lactosivorans", "strain": "strain=KCTC 52281", "accession": "GCA_003254665.1", "taxid": 2185141, "species_taxid": 2185141, "relation_to_type": "type", "validated": true, "ani": 82.2555, "matched_fragments": 862, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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